[Debian-med-packaging] Bug#778165: vxl: ftbfs with GCC-5

Matthias Klose doko at debian.org
Thu Feb 12 10:37:48 UTC 2015 

Package: src:vxl
Version: 1.17.0.dfsg-1
Severity: normal
Tags: sid stretch
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-5

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-5/g++-5, but succeeds to build with gcc-4.9/g++-4.9. The
severity of this report may be raised before the stretch release.

The full build log can be found at:
http://people.debian.org/~doko/logs/gcc5-20150205/vxl_1.17.0.dfsg-1_unstable_gcc5.log
The last lines of the build log are at the end of this report.

To build with GCC 5, either set CC=gcc-5 CXX=g++-5 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t experimental install g++ 

Common build failures are C11 as the default C mode, new warnings
resulting in build failures with -Werror turned on, or new/dropped
symbols in Debian symbols files.  For other C/C++ related build failures
see the porting guide at http://gcc.gnu.org/gcc-5/porting_to.html

[...]
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CMakeFiles/v3p_netlib.dir/lapack/complex16/zgesc2.o CMakeFiles/v3p_netlib.dir/lapack/complex16/ztgsen.o CMakeFiles/v3p_netlib.dir/lapack/complex16/zgghrd.o CMakeFiles/v3p_netlib.dir/lapack/complex16/zgees.o CMakeFiles/v3p_netlib.dir/lapack/complex16/ztrexc.o CMakeFiles/v3p_netlib.dir/lapack/complex16/ztrsen.o CMakeFiles/v3p_netlib.dir/lapack/complex16/ztrsyl.o CMakeFiles/v3p_netlib.dir/lapack/double/dgecon.o CMakeFiles/v3p_netlib.dir/lapack/double/dgeqr2.o CMakeFiles/v3p_netlib.dir/lapack/double/dgeqrf.o CMakeFiles/v3p_netlib.dir/lapack/double/dgerq2.o CMakeFiles/v3p_netlib.dir/lapack/double/dgesc2.o CMakeFiles/v3p_netlib.dir/lapack/double/dgetc2.o CMakeFiles/v3p_netlib.dir/lapack/double/dggbak.o CMakeFiles/v3p_netlib.dir/lapack/double/dggbal.o CMakeFiles/v3p_netlib.dir/lapack/double/dgges.o CMakeFiles/v3p_netlib.dir/lapack/double/dgghrd.o CMakeFiles/v3p_netlib.dir/lapack/double/dhgeqz.o CMakeFiles/v3p_netlib.dir/lapack/double/dlabad.o CMakeFiles/v3p_netlib.dir/lapack/double/dlacon.o 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CMakeFiles/v3p_netlib.dir/lapack/double/dlatrs.o CMakeFiles/v3p_netlib.dir/lapack/double/dorg2r.o CMakeFiles/v3p_netlib.dir/lapack/double/dorgqr.o CMakeFiles/v3p_netlib.dir/lapack/double/dorgr2.o CMakeFiles/v3p_netlib.dir/lapack/double/dorm2r.o CMakeFiles/v3p_netlib.dir/lapack/double/dormqr.o CMakeFiles/v3p_netlib.dir/lapack/double/dormr2.o CMakeFiles/v3p_netlib.dir/lapack/double/drscl.o CMakeFiles/v3p_netlib.dir/lapack/double/dsptrf.o CMakeFiles/v3p_netlib.dir/lapack/double/dsptrs.o CMakeFiles/v3p_netlib.dir/lapack/double/dspr.o CMakeFiles/v3p_netlib.dir/lapack/double/dtgex2.o CMakeFiles/v3p_netlib.dir/lapack/double/dtgexc.o CMakeFiles/v3p_netlib.dir/lapack/double/dtgsen.o CMakeFiles/v3p_netlib.dir/lapack/double/dtgsy2.o CMakeFiles/v3p_netlib.dir/lapack/double/dtgsyl.o CMakeFiles/v3p_netlib.dir/lapack/double/dlae2.o CMakeFiles/v3p_netlib.dir/lapack/double/dlanst.o CMakeFiles/v3p_netlib.dir/lapack/double/dlarnv.o CMakeFiles/v3p_netlib.dir/lapack/double/dlaruv.o CMakeFiles/v3p_netlib.dir/lapack/double/dlasr.o CMakeFiles/v3p_netlib.dir/lapack/double/dlasrt.o CMakeFiles/v3p_netlib.dir/lapack/double/dsteqr.o CMakeFiles/v3p_netlib.dir/lapack/double/dzsum1.o CMakeFiles/v3p_netlib.dir/lapack/single/sgeqpf.o CMakeFiles/v3p_netlib.dir/lapack/single/sgeqr2.o CMakeFiles/v3p_netlib.dir/lapack/single/sgerq2.o CMakeFiles/v3p_netlib.dir/lapack/single/sggsvd.o CMakeFiles/v3p_netlib.dir/lapack/single/sggsvp.o CMakeFiles/v3p_netlib.dir/lapack/single/slacpy.o CMakeFiles/v3p_netlib.dir/lapack/single/slags2.o CMakeFiles/v3p_netlib.dir/lapack/single/slange.o CMakeFiles/v3p_netlib.dir/lapack/single/slapll.o CMakeFiles/v3p_netlib.dir/lapack/single/slapmt.o CMakeFiles/v3p_netlib.dir/lapack/single/slapy2.o CMakeFiles/v3p_netlib.dir/lapack/single/slarf.o CMakeFiles/v3p_netlib.dir/lapack/single/slarfg.o CMakeFiles/v3p_netlib.dir/lapack/single/slartg.o CMakeFiles/v3p_netlib.dir/lapack/single/slas2.o CMakeFiles/v3p_netlib.dir/lapack/single/slaset.o CMakeFiles/v3p_netlib.dir/lapack/single/slassq.o CMakeFiles/v3p_netlib.dir/lapack/single/slasv2.o CMakeFiles/v3p_netlib.dir/lapack/single/sorg2r.o CMakeFiles/v3p_netlib.dir/lapack/single/sorm2r.o CMakeFiles/v3p_netlib.dir/lapack/single/sormr2.o CMakeFiles/v3p_netlib.dir/lapack/single/stgsja.o CMakeFiles/v3p_netlib.dir/lapack/util/ieeeck.o CMakeFiles/v3p_netlib.dir/lapack/util/ilaenv.o CMakeFiles/v3p_netlib.dir/lapack/util/izmax1.o CMakeFiles/v3p_netlib.dir/lapack/util/lsame.o CMakeFiles/v3p_netlib.dir/napack/cg.o CMakeFiles/v3p_netlib.dir/minpack/dpmpar.o CMakeFiles/v3p_netlib.dir/minpack/enorm.o CMakeFiles/v3p_netlib.dir/minpack/fdjac2.o CMakeFiles/v3p_netlib.dir/minpack/lmder.o CMakeFiles/v3p_netlib.dir/minpack/lmder1.o CMakeFiles/v3p_netlib.dir/minpack/lmdif.o CMakeFiles/v3p_netlib.dir/minpack/lmpar.o CMakeFiles/v3p_netlib.dir/minpack/qrfac.o CMakeFiles/v3p_netlib.dir/minpack/qrsolv.o CMakeFiles/v3p_netlib.dir/opt/lbfgs.o CMakeFiles/v3p_netlib.dir/opt/lbfgsb.o CMakeFiles/v3p_netlib.dir/linalg/lsqr.o CMakeFiles/v3p_netlib.dir/toms/rpoly.o CMakeFiles/v3p_netlib.dir/datapac/camsun.o CMakeFiles/v3p_netlib.dir/mathews/simpson.o CMakeFiles/v3p_netlib.dir/mathews/trapezod.o CMakeFiles/v3p_netlib.dir/mathews/adaquad.o CMakeFiles/v3p_netlib.dir/sparse/spAllocate.o CMakeFiles/v3p_netlib.dir/sparse/spBuild.o CMakeFiles/v3p_netlib.dir/sparse/spFactor.o CMakeFiles/v3p_netlib.dir/sparse/spSolve.o CMakeFiles/v3p_netlib.dir/sparse/spUtils.o CMakeFiles/v3p_netlib.dir/sparse/spOutput.o -lm 
cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/v3p/netlib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libv3p_netlib.so.1.17.0 ../../lib/libv3p_netlib.so.1.17 ../../lib/libv3p_netlib.so
make[3]: Leaving directory '/«PKGBUILDDIR»/obj-x86_64-linux-gnu'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles  48 49 50 51 52 53
[  8%] Built target v3p_netlib
Linking CXX shared library ../../lib/libdcmtk.so
cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/v3p/dcmtk && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcmtk.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2   -Wno-cast-qual -Wno-unused-variable  -Wl,-z,relro -Wl,--as-needed  -shared -Wl,-soname,libdcmtk.so.1.17 -o ../../lib/libdcmtk.so.1.17.0 CMakeFiles/dcmtk.dir/ofstd/libsrc/ofcond.o CMakeFiles/dcmtk.dir/ofstd/libsrc/ofconsol.o CMakeFiles/dcmtk.dir/ofstd/libsrc/ofcrc32.o CMakeFiles/dcmtk.dir/ofstd/libsrc/ofdate.o CMakeFiles/dcmtk.dir/ofstd/libsrc/ofdatime.o CMakeFiles/dcmtk.dir/ofstd/libsrc/oflist.o CMakeFiles/dcmtk.dir/ofstd/libsrc/ofstd.o CMakeFiles/dcmtk.dir/ofstd/libsrc/ofstring.o CMakeFiles/dcmtk.dir/ofstd/libsrc/ofthread.o CMakeFiles/dcmtk.dir/ofstd/libsrc/oftime.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcbytstr.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcchrstr.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dccodec.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcdatset.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcdebug.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcdicent.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcdict.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcdictzz.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcdirrec.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcelem.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcerror.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcfilefo.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dchashdi.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcistrma.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcistrmf.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcistrmz.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcitem.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dclist.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcmetinf.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcobject.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcostrma.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcostrmf.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcostrmz.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcpcache.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcpixel.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcpixseq.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcpxitem.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcsequen.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcstack.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcswap.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dctag.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dctagkey.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dctypes.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcuid.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvm.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvr.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrae.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvras.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrat.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrcs.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrda.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrds.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrdt.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrfd.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrfl.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvris.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrlo.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrlt.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrobow.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrof.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrpn.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrpobw.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrsh.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrsl.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrss.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrst.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrtm.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrui.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrul.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrulup.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrus.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcvrut.o CMakeFiles/dcmtk.dir/dcmdata/libsrc/dcxfer.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dcmimage.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dibaslut.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/didislut.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/didispfn.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/didocu.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/digsdfn.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/digsdlut.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/diimage.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/diinpx.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/diluptab.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dimo1img.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dimo2img.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dimoimg.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dimoimg3.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dimoimg4.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dimoimg5.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dimomod.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dimoopx.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/dimopx.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/diovdat.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/diovlay.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/diovlimg.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/diovpln.o CMakeFiles/dcmtk.dir/dcmimgle/libsrc/diutils.o -lz 
cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/v3p/dcmtk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libdcmtk.so.1.17.0 ../../lib/libdcmtk.so.1.17 ../../lib/libdcmtk.so
make[3]: Leaving directory '/«PKGBUILDDIR»/obj-x86_64-linux-gnu'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles  31 32
[  8%] Built target dcmtk
make[2]: Leaving directory '/«PKGBUILDDIR»/obj-x86_64-linux-gnu'
make[1]: *** [all] Error 2
Makefile:130: recipe for target 'all' failed
make[1]: Leaving directory '/«PKGBUILDDIR»/obj-x86_64-linux-gnu'
dh_auto_build: make -j10 returned exit code 2
make: *** [build-arch] Error 2
debian/rules:67: recipe for target 'build-arch' failed
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2

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