[Debian-med-packaging] Bug#779296: trimmomatic: directory of adapters missing from package
andreas at an3as.eu
Thu Feb 26 21:01:43 UTC 2015
On Thu, Feb 26, 2015 at 08:40:22PM +0000, Michael Crusoe wrote:
> End users will expect adapter files to be installed and available. Please
> push into Jessie.
OK. I'll bump the severity of this bug to serious.
> > Regarding the actual bug: Do you have a clue to what directory in the
> > installed package the adapters need to be moved. It seems they are
> > relative to the actual working dir and users are supposed to call the
> > package out of the source tree which is not possible. Any hint about
> > the correct file system layout (if needed with patches) would be
> > welcome. I'd like to fix this as soon as possible.
> The path to the specific adapter file to use is set by the user via the
> ILLUMINACLIP option, so the files can go into any directory;
> /usr/share/docs/trimmomatic/examples or /usr/share/trimmomatic come to mind
> Their location should be highlighted in the manual pages and
Since we are using a wrapper anyway I have set this inside the wrapper
and thus do not see any need for README.Debian. If you agree, please
have a look at
and please test the package whether I have interpreted your links
correctly and the package can be uploaded as is. If you could provide
a test using the adapters this would be more than welcome. Our goal
should be tro get at least 80% of our packages autopkgtest-able.
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