[Debian-med-packaging] Bug#775621: python-biopython: FTBFS in jessie: Tests failures

[Stuart Prescott]

Control: tag -1 unreproducible

The actual failure is:

test_raxml_tool ... FAIL

[…]

======================================================================
ERROR: test_raxml (test_raxml_tool.AppTests)
Run RAxML using the wrapper.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/«BUILDDIR»/python-
biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Tests/test_raxml_tool.py", 
line 45, in test_raxml
    out, err = cmd()
  File "/«BUILDDIR»/python-
biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Application/__init__.py", 
line 513, in __call__
    stdout_str, stderr_str)
ApplicationError: Non-zero return code 255 from 'raxmlHPC -m PROTCATWAG -n 
test -p 10000 -s Phylip/interlaced2.phy'

----------------------------------------------------------------------

I cannot reproduce this failure in a jessie chroot. I'm unable to cause 
raxmlHPC to exit(-1) here when I try (although it certainly has plenty of 
places where it can do that in its code).

cheers
Stuart

 
-- 
Stuart Prescott
Senior Lecturer in Chemical Engineering

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