[Debian-med-packaging] Bug#775820: ITP: vsearch -- tool for processing metagenomic sequences

Andreas Tille tille at debian.org
Tue Jan 20 12:52:39 UTC 2015


Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>

* Package name    : vsearch
  Version         : 1.0.7
  Upstream Author : Torbjørn Rognes
* URL             : https://github.com/torognes/vsearch/
* License         : Affero-GPL-3
  Programming Lang: C
  Description     : tool for processing metagenomic sequences
 Open and free 64-bit multithreaded tool for processing metagenomic sequences,
 including searching, clustering, chimera detection, dereplication, sorting,
 masking and shuffling
 .
 The aim of this project is to create an alternative to the USEARCH tool
 developed by Robert C. Edgar (2010). The new tool should:
 .
  - have open source code with an appropriate open source license
  - be free of charge, gratis
  - have a 64-bit design that handles very large databases and much more
    than 4GB of memory
  - be as accurate or more accurate than usearch
  - be as fast or faster than usearch


Remark this package was prepared by Tim Booth from Bio-Linux and finalised
by myself.  It will be maintained in the Debian Med team at
   svn://anonscm.debian.org/debian-med/trunk/packages/vsearch/trunk/



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