[Debian-med-packaging] Bug#775820: ITP: vsearch -- tool for processing metagenomic sequences
Andreas Tille
tille at debian.org
Tue Jan 20 12:52:39 UTC 2015
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>
* Package name : vsearch
Version : 1.0.7
Upstream Author : Torbjørn Rognes
* URL : https://github.com/torognes/vsearch/
* License : Affero-GPL-3
Programming Lang: C
Description : tool for processing metagenomic sequences
Open and free 64-bit multithreaded tool for processing metagenomic sequences,
including searching, clustering, chimera detection, dereplication, sorting,
masking and shuffling
.
The aim of this project is to create an alternative to the USEARCH tool
developed by Robert C. Edgar (2010). The new tool should:
.
- have open source code with an appropriate open source license
- be free of charge, gratis
- have a 64-bit design that handles very large databases and much more
than 4GB of memory
- be as accurate or more accurate than usearch
- be as fast or faster than usearch
Remark this package was prepared by Tim Booth from Bio-Linux and finalised
by myself. It will be maintained in the Debian Med team at
svn://anonscm.debian.org/debian-med/trunk/packages/vsearch/trunk/
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