[Debian-med-packaging] Bug#792510: blast_formatter: need internet access even if run locally

[Yann Dumont]

Well, you may not have assumed so... I run this command in another tab of
my console (echo of the variable returned nothing, I was kind of suspicion
there).

Now I have done it correctly (echo returns no), but it doesn't change the
result : I still have the warnings and the empty result file.

If it can help, when I run formatter with net on, it seem to be downloading
something (about 500 Ko-2Mo, looking to traffic curve).

2015-07-15 17:42 GMT+02:00 Aaron M. Ucko <ucko at debian.org>:

> Yes, that's what I meant, assuming you proceeded to run blast_formatter
> from the same shell session.  I'll take a closer look when I get a chance.
>
> -- Aaron
>
> Yann Dumont <yann.dumont0 at gmail.com> writes:
>
> > I am not sure I have done what you asked correctly. I am not very
> familiar
> > with environnement variables. I just run
> >
> > $ export NCBI_CONFIG__GENBANK__PREOPEN=no
> >
> > without rebooting, and it did not change anything.
> >
> > 2015-07-15 16:57 GMT+02:00 Aaron M. Ucko <amu at alum.mit.edu>:
> >
> >> Yann Dumont <yann.dumont0 at gmail.com> writes:
> >>
> >> > I am currently have some connection issues, so I realized that
> >> blast_formatter
> >> > failled when internet connection is off.
> >>
> >> I'm sorry to hear that.  Does the environment setting
> >>
> >> NCBI_CONFIG__GENBANK__PREOPEN=no
> >>
> >> help?
> >>
> >> --
> >> Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
> >> http://www.mit.edu/~amu/ |
> >> http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu
>
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