[Debian-med-packaging] Bug#793345: hyphy: FTBFS on hurd-i386: cannot find -lc_p

[Andreas Tille]

Hi,

any hint how to fix this would be welcome.

Kind regards

      Andreas.

On Wed, Jul 22, 2015 at 10:33:31PM -0400, Aaron M. Ucko wrote:
> Source: hyphy
> Version: 2.2.5+dfsg-1
> Severity: important
> 
> The hurd-i386 build of hyphy failed:
> 
>   /usr/bin/c++   -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2    -Wl,-z,relro -g -fsigned-char -O3 -msse3  -fopenmp -msse3 -g -fprofile-arcs -ftest-coverage -pg CMakeFiles/HYPHYGTEST.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/calcnode2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/category.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/constant.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/error.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/formula.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/list.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/operation.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/parser.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/regex.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/sequence.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/site.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/stack.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/strings.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/trie.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/variable.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYGTEST.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o  -o HYPHYGTEST  -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 contrib/gtest-1.7.0/libgtest.a -lpthread 
>   /usr/bin/ld: cannot find -lc_p
>   collect2: error: ld returned 1 exit status
>   make[5]: *** [HYPHYGTEST] Error 1
> 
> Could you please take a look?
> 
> Thanks!
> 
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