[Debian-med-packaging] Bug#762647: Bug#762647: samtools: FTBFS: test suite errors

[Charles Plessy]

Le Thu, Jun 18, 2015 at 11:25:46PM -0400, Aaron M. Ucko a écrit :
> 
> I'm glad to see those platforms are doing better now, but that was only
> part of the problem.  There are still unexpected failures on i386 and
> kfreebsd-i386 (though the count's dropped from 95 to 2, a big improvement):
> 
>   UNEXPECTED FAIL: Output mismatch for $samtools mpileup -x -F 0.60 -u -f mpileup.ref.fa indels.bam|$filter|awk '/INDEL/'
>   
>   See FAIL-59.out.1 vs expected/59.out
>   UNEXPECTED FAIL: Output mismatch for $samtools mpileup -x -F 0.60 -u -f mpileup.ref.fa indels.cram|$filter|awk '/INDEL/'
>   
>   See FAIL-59.out.2 vs expected/59.out
> 
> Could you please look into them as well?

Hi Aaron,

failures on 32-bits platforms are expected to be fixed in the next upstream release.

    https://github.com/samtools/samtools/issues/305

I propose to wait for it.  But if need is, it may be possible to backport the patches.

Cheers,

-- 
Charles