[Debian-med-packaging] Bug#780816: tophat: embedded samtools copy

Alex Mestiashvili alex at biotec.tu-dresden.de
Wed Mar 25 13:49:15 UTC 2015

 >Dear Maintainer,
 >Tophat 2.0.13 started to include a convience copy of samtools 0.1.18, 
 >I believe
 >this is technically a violation of Debian policy. Though I'm not sure 
 >how hard
 >it would be properly fix the issue.
 >Diane Trout

Hi Diane,

Please see this thread for more details:

Until we have a solution we need to ship samtools 0.1.18 with tophat.


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