[Debian-med-packaging] Bug#780816: tophat: embedded samtools copy

[Alex Mestiashvili]

 >Dear Maintainer,
 >
 >Tophat 2.0.13 started to include a convience copy of samtools 0.1.18, 
 >I believe
 >this is technically a violation of Debian policy. Though I'm not sure 
 >how hard
 >it would be properly fix the issue.
 >
 >Diane Trout


Hi Diane,

Please see this thread for more details:
  https://lists.debian.org/debian-med/2014/10/msg00004.html

Until we have a solution we need to ship samtools 0.1.18 with tophat.

Regards,
Alex