[Debian-med-packaging] [biopython] Building Debian jessie packages for 1.65 fails during tests (#540)

[Andreas Tille]

On Fri, May 08, 2015 at 05:21:14PM -0700, Kai Blin wrote:
> Ok, the `test_some_abs` error is reproducible on a clean test VM, let me test this on my dev box running Ubuntu 14.04. 

I injected packaging stuff for 1.65 into SVN and can confirm that the
following error occures:

FAIL: test_some_abs (test_SeqIO_index.NewIndexTest)
Check absolute filenames in index.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/tmp/buildd/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Tests/test_SeqIO_index.py", line 269, in test_some_abs
    self.check(t, expt_sff_files, expt_sff_files)
  File "/tmp/buildd/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Tests/test_SeqIO_index.py", line 204, in check
    self.assertEqual(filenames, expt_sff_files)
AssertionError: Lists differ: [u'buildd/python-biopython-1.6... != ['/tmp/buildd/python-biopython...

First differing element 0:
buildd/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Tests/Roche/E3MFGYR02_no_manifest.sff
/tmp/buildd/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Tests/Roche/E3MFGYR02_no_manifest.sff

Diff is 649 characters long. Set self.maxDiff to None to see it.


I admit I have no idea how to fix this.

Kind regards

        Andreas.

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