[Debian-med-packaging] Test suite of snpStats 1.18.0 fails

[Andreas Tille]

Hi,

I want to upgrade the BioConductor packages in Debian to the latest
versions and stumbled upon snpStats 1.18.0.  As a testsuite I try to
build the vignettes this way:

for rnw in *.Rnw ; do
rfile=`basename $rnw nw`
R --no-save <<EOT
  Stangle("$rnw")
  source("$rfile", echo=TRUE)
EOT

Unfortunately this ends up in:

> allest["rs10882596"]
Error in eval(expr, envir, enclos) : object 'allest' not found
Calls: source -> withVisible -> eval -> eval
Execution halted

Any hint about this?

Kind regards

        Andreas.

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