[Debian-med-packaging] Bug#805106: ITP: vsearch-data -- example data for vsearch tool for processing metagenomic sequences
Andreas Tille
tille at debian.org
Sat Nov 14 19:23:50 UTC 2015
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>
* Package name : vsearch-data
Version : 1.0.0
Upstream Author : Torbjørn Rognes <torognes at ifi.uio.no>
* URL : https://github.com/torognes/vsearch-data/
* License : BSD
Description : example data for vsearch tool for processing metagenomic sequences
Open and free 64-bit multithreaded tool for processing metagenomic sequences,
including searching, clustering, chimera detection, dereplication, sorting,
masking and shuffling
.
The aim of this project is to create an alternative to the USEARCH tool
developed by Robert C. Edgar (2010). The new tool should:
.
- have open source code with an appropriate open source license
- be free of charge, gratis
- have a 64-bit design that handles very large databases and much more
than 4GB of memory
- be as accurate or more accurate than usearch
- be as fast or faster than usearch
.
This package only contains data to run the vsearch test suite.
Remark: Upstream has split the test data which were originally part of
the vsearch package into a separate source. To be able to run the
unit tests and verify the functionality of vsearch the data are now
in a separate source package. It will be maintaines by the Debian Med
team at
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/vsearch-data/trunk/
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