[Debian-med-packaging] Bug#800135: Bug#800135: python-mne: FTBFS: /usr/share/openmpi/help-mpi-errors.txt: No such file or directory

[Alexandre Gramfort]

hi,

sorry for the delay.

Jaakko in CC has more time than me and is working
on the packaging of our latest release v0.10. We are hoping to fix it
with the new package. To avoid future issues with Mayavi we have
also decided to remove it from the strong deps of python-mne.

We'll probably push a v0.10 in the next few days to debian.org

Best,
Alex



On Sun, Sep 27, 2015 at 11:37 AM, Chris Lamb <lamby at debian.org> wrote:
> Source: python-mne
> Version: 0.8.6+dfsg-2
> Severity: serious
> Justification: fails to build from source
> User: reproducible-builds at lists.alioth.debian.org
> Usertags: ftbfs
> X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org
>
> Dear Maintainer,
>
> python-mne fails to build from source in unstable/amd64. On the face of
> it you are missing openmpi-common in Build-Depends, but installing this
> surfaces a different error in the tests. Here's the build log with the
> shipped B-D:
>
>   [..]
>
>      debian/rules override_dh_auto_test
>   make[1]: Entering directory '/tmp/buildd/python-mne-0.8.6+dfsg'
>   MNE_DONTWRITE_HOME=true MNE_SKIP_SAMPLE_DATASET_TESTS=true
>   MNE_FORCE_SERIAL=true MNE_SKIP_NETWORK_TESTS=1 \
>     xvfb-run --auto-servernum --server-num=20 -s "-screen 0 1024x768x24
>     -ac +extension GLX +render -noreset" \
>     nosetests mne
>   Xlib:  extension "RANDR" missing on display ":20".
>   /usr/lib/python2.7/dist-packages/pyface/toolkit.py:43:
>   DeprecationWarning: Default toolkit will change to 'qt4' in PyFace 5.0
>     DeprecationWarning)
>   [profitbricks-build1-amd64:49321] [[INVALID],INVALID] ORTE_ERROR_LOG:
>   A system-required executable either could not be found or was not
>   executable by this user in file ess_singleton_module.c at line 231
>   [profitbricks-build1-amd64:49321] [[INVALID],INVALID] ORTE_ERROR_LOG:
>   A system-required executable either could not be found or was not
>   executable by this user in file ess_singleton_module.c at line 140
>   [profitbricks-build1-amd64:49321] [[INVALID],INVALID] ORTE_ERROR_LOG:
>   A system-required executable either could not be found or was not
>   executable by this user in file runtime/orte_init.c at line 128
>   --------------------------------------------------------------------------
>   Sorry!  You were supposed to get help about:
>       orte_init:startup:internal-failure
>   But I couldn't open the help file:
>       /usr/share/openmpi/help-orte-runtime: No such file or directory.
>       Sorry!
>   --------------------------------------------------------------------------
>   --------------------------------------------------------------------------
>   Sorry!  You were supposed to get help about:
>       mpi_init:startup:internal-failure
>   But I couldn't open the help file:
>       /usr/share/openmpi/help-mpi-runtime: No such file or directory.
>       Sorry!
>   --------------------------------------------------------------------------
>   --------------------------------------------------------------------------
>   Sorry!  You were supposed to get help about:
>       mpi_errors_are_fatal unknown handle
>   But I couldn't open the help file:
>       /usr/share/openmpi/help-mpi-errors.txt: No such file or directory.
>        Sorry!
>   --------------------------------------------------------------------------
>   --------------------------------------------------------------------------
>   Sorry!  You were supposed to get help about:
>       ompi mpi abort:cannot guarantee all killed
>   But I couldn't open the help file:
>       /usr/share/openmpi/help-mpi-runtime.txt: No such file or
>       directory.  Sorry!
>   --------------------------------------------------------------------------
>   debian/rules:18: recipe for target 'override_dh_auto_test' failed
>   make[1]: *** [override_dh_auto_test] Error 1
>   make[1]: Leaving directory '/tmp/buildd/python-mne-0.8.6+dfsg'
>   debian/rules:7: recipe for target 'build' failed
>   make: *** [build] Error 2
>   dpkg-buildpackage: error: debian/rules build gave error exit status 2
>
>   [..]
>
> The full build log is attached or can be viewed here:
>
>     https://reproducible.debian.net/logs/unstable/amd64/python-mne_0.8.6+dfsg-2.build1.log.gz
>
>
> Regards,
>
> --
>       ,''`.
>      : :'  :     Chris Lamb
>      `. `'`      lamby at debian.org / chris-lamb.co.uk
>        `-
>
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