[Debian-med-packaging] Bug#767145: Re: Bug#767145: autodocktools: fails to start the GUI
Andreas Tille
andreas at an3as.eu
Thu Nov 26 09:50:29 UTC 2015
Hi Steffen,
52 weekends later ;-): Any news about this?
Kind regards
Andreas.
On Wed, Oct 29, 2014 at 01:03:04AM +0100, Steffen Möller wrote:
> Hi Andreas, hi Senthil,
>
> Over here I do even get that far - I run into the missing
> Python Image module - which I ment to have been fixed a long
> time ago. Also, everything attempts to install Tk8.5, not 8.6,
> so ... hm.
>
> I have to reserve one of the upcoming weekends, I am afraid.
> Cannot immediately jump at it, sorry. With some good luck it
> was just an upload that never happened. Will find out.
>
> Best,
>
> Steffen
>
> > Gesendet: Dienstag, 28. Oktober 2014 um 21:06 Uhr
> > Von: "Andreas Tille" <andreas at an3as.eu>
> > An: "Senthil Kumaran" <stylesen at gmail.com>, 767145 at bugs.debian.org
> > Cc: "Steffen Möller" <steffen_moeller at gmx.de>
> > Betreff: Re: Bug#767145: autodocktools: fails to start the GUI
> >
> > Hi Senthil,
> >
> > thanks for your bug report. I can confirm that I'm able to reproduce
> > the problem here.
> >
> > A web search for the string
> > "TclError: cannot use geometry manager grid inside"
> > lead to sevral autodocktools / mgltools related hints. I tried to
> > follow one of them[1] which at the bottom says:
> >
> > As the latest builds are bundling tcl and tk (which is version 8.5) we cannot
> > test for compatibility with tcl/tk-8.6
> >
> > and checked where tcl/tk is actually used. As far as I can see only the
> > module mgltools-opengltk has a tcltk dependency. I tried building this
> > with forcing 8.5 instead of Debian's default 8.6 and tried what might
> > happen but the error remains. So I'm a bit clueless what to do now and
> > I wonder whether Steffen who has way more insight into this software
> > might think.
> >
> > Steffen, just tell me if you are interested in my patches for
> > mgltools-opengltk which I did not commited since they do not solve
> > the problem. Its basically deactivating tcllib.patch and fixing
> > the Build-Dependency.
> >
> > Kind regards
> >
> > Andreas.
> >
> > [1] http://mgldev.scripps.edu/bugs/show_bug.cgi?id=1346
> >
> > On Tue, Oct 28, 2014 at 11:24:59PM +0530, Senthil Kumaran wrote:
> > > Package: autodocktools
> > > Version: 1.5.7~rc1+cvs.20140424-1
> > > Severity: important
> > >
> > > Dear Maintainer,
> > >
> > > *** Reporter, please consider answering these questions, where appropriate ***
> > >
> > > * What led up to the situation?
> > > * What exactly did you do (or not do) that was effective (or
> > > ineffective)?
> > > * What was the outcome of this action?
> > > * What outcome did you expect instead?
> > >
> > > *** End of the template - remove these template lines ***
> > >
> > > After installing autodocktools via apt-get, trying to start it in a machine
> > > with GNOME desktop environment fails with the following error. Hence
> > > autodocktools GUI is unusable.
> > >
> > > <snip>
> > > stylesen at harshu:~$ autodocktools
> > > Run ADT from /usr/lib/python2.7/dist-packages/AutoDockTools
> > > Traceback (most recent call last):
> > > File "/usr/lib/python2.7/dist-packages/AutoDockTools/__init__.py", line 433,
> > > in runADT
> > > title=title, withShell= not interactive, verbose=False, gui=gui)
> > > File "/usr/lib/python2.7/dist-packages/Pmv/moleculeViewer.py", line 1026, in
> > > __init__
> > > trapExceptions=trapExceptions)
> > > File "/usr/lib/python2.7/dist-packages/ViewerFramework/VF.py", line 387, in
> > > __init__
> > > verbose=verbose)
> > > File "/usr/lib/python2.7/dist-packages/ViewerFramework/VFGUI.py", line 444,
> > > in __init__
> > > verbose=verbose,guiMaster=VIEWER_root,)
> > > File "/usr/lib/python2.7/dist-packages/DejaVu/Viewer.py", line 586, in
> > > __init__
> > > cnf=cnf, **kw)
> > > File "/usr/lib/python2.7/dist-packages/DejaVu/Viewer.py", line 285, in
> > > AddCamera
> > > c = classCamera(master, screenName, self, num, cnf=cnf, **kw)
> > > File "/usr/lib/python2.7/dist-packages/DejaVu/Camera.py", line 2189, in
> > > __init__
> > > self.AddTrackball()
> > > File "/usr/lib/python2.7/dist-packages/DejaVu/Camera.py", line 2583, in
> > > AddTrackball
> > > self.trackball = Trackball(self, size, rscale, tscale, sscale, renorm )
> > > File "/usr/lib/python2.7/dist-packages/DejaVu/Trackball.py", line 88, in
> > > __init__
> > > self.createSpinGui()
> > > File "/usr/lib/python2.7/dist-packages/DejaVu/Trackball.py", line 726, in
> > > createSpinGui
> > > callback=self.setWithSpinGui,
> > > File "/usr/lib/python2.7/dist-
> > > packages/mglutil/gui/BasicWidgets/Tk/vector3DGUI.py", line 90, in __init__
> > > self.createEntries(self.frame)
> > > File "/usr/lib/python2.7/dist-
> > > packages/mglutil/gui/BasicWidgets/Tk/vector3DGUI.py", line 360, in
> > > createEntries
> > > self.f.grid(column=3, rowspan=3)
> > > File "/usr/lib/python2.7/lib-tk/Tkinter.py", line 2022, in grid_configure
> > > + self._options(cnf, kw))
> > > TclError: cannot use geometry manager grid inside
> > > ..139747144006544.139747144007048.139747087050008.139747087052240 which already
> > > has slaves managed by pack
> > > hit enter to continue
> > > </snip>
> > >
> > >
> > >
> > > -- System Information:
> > > Debian Release: jessie/sid
> > > APT prefers testing-updates
> > > APT policy: (500, 'testing-updates'), (500, 'testing')
> > > Architecture: amd64 (x86_64)
> > >
> > > Kernel: Linux 3.16-2-amd64 (SMP w/4 CPU cores)
> > > Locale: LANG=en_IN, LC_CTYPE=en_IN (charmap=UTF-8)
> > > Shell: /bin/sh linked to /bin/dash
> > >
> > > Versions of packages autodocktools depends on:
> > > ii mgltools-molkit 1.5.7~rc1+cvs.20140424-1
> > > ii mgltools-pmv 1.5.7~rc1+cvs.20140424-1
> > > ii mgltools-support 1.5.7~rc1+cvs.20140424-1
> > > ii mgltools-viewerframework 1.5.7~rc1+cvs.20140424-1
> > > ii mgltools-volume 1.5.7~rc1+cvs.20140424-1
> > > ii python 2.7.8-1
> > > ii python-pil.imagetk [python-imaging-tk] 2.5.1-1
> > >
> > > Versions of packages autodocktools recommends:
> > > ii mgltools-pyautodock 1.5.7~rc1+cvs.20140424-1
> > > ii mgltools-utpackages 1.5.7~rc1+cvs.20140424-1
> > > ii mgltools-webservices 1.5.7~rc1+cvs.20140424-1
> > >
> > > Versions of packages autodocktools suggests:
> > > pn autodock <none>
> > > pn autodock-vina <none>
> > > pn ballview <none>
> > > pn mgltools-cadd <none>
> > >
> > > -- no debconf information
> > >
> > > _______________________________________________
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> > > Debian-med-packaging at lists.alioth.debian.org
> > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
> > >
> >
> > --
> > http://fam-tille.de
> >
>
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