[Debian-med-packaging] Skbio upload?

[Andreas Tille]

Hi Kevin,

thanks for your work on this.

On Mon, Nov 30, 2015 at 01:45:01PM +1100, Kevin Murray wrote:
> Could someone please review & sponsor the newest version of python-skbio that I
> just pushed to git?

Unfortunately it does not build at my side in a pbuilder chroot:


EOF
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '*.pyd' found anywhere in distribution
Traceback (most recent call last):
  File "setup.py", line 131, in <module>
    'skbio.stats.ordination.tests': ['data/*']
  File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
    _setup_distribution = dist = klass(attrs)
  File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 262, in __init__
    self.fetch_build_eggs(attrs['setup_requires'])
  File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 287, in fetch_build_eggs
    replace_conflicting=True,
  File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 631, in resolve
    dist = best[req.key] = env.best_match(req, ws, installer)
  File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 874, in best_match
    return self.obtain(req, installer)
  File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 886, in obtain
    return installer(requirement)
  File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 338, in fetch_build_egg
    return cmd.easy_install(req)
  File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 636, in easy_install
    return self.install_item(spec, dist.location, tmpdir, deps)
  File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 666, in install_item
    dists = self.install_eggs(spec, download, tmpdir)
  File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 856, in install_eggs
    return self.build_and_install(setup_script, setup_base)
  File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 1078, in build_and_install
    self.run_setup(setup_script, setup_base, args)
  File "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line 1066, in run_setup
    raise DistutilsError("Setup script exited with %s" % (v.args[0],))
distutils.errors.DistutilsError: Setup script exited with error: SandboxViolation: mkdir('/home/tillea/debian-maintain/alioth/debian-med_git/build-area/python-skbio-0.4.0/.pybuild/pythonX.Y_2.7/build/numpy', 511) {}

The package setup script has attempted to modify files on your system
that are not within the EasyInstall build area, and has been aborted.


Full build log attached.

Kind regards

        Andreas.

 

-- 
http://fam-tille.de