[Debian-med-packaging] Bug#806743: figtree: version installed is older than advertised
Joseph W. Brown
phylo.jwb at gmail.com
Mon Nov 30 18:18:05 UTC 2015
Package: figtree
Version: 1.4-2
Severity: normal
Dear Maintainer,
The version of `figtree' advertised is 1.4-2, but the installed version is
instead 1.4-1.
Fix: installation should involve the proper version of the package.
Below is a transcript demonstrating the problem.
## search
$ apt-cache show figtree
Package: figtree
Version: 1.4-2
Installed-Size: 1028
Maintainer: Debian Med Packaging Team <debian-med-
packaging at lists.alioth.debian.org>
Architecture: all
Depends: default-jre | java5-runtime | java6-runtime | java7-runtime,
jarwrapper (>= 0.5), libfreehep-export-java, libfreehep-graphics2d-java,
libfreehep-graphicsio-emf-java, libfreehep-graphicsio-java, libfreehep-
graphicsio-pdf-java, libfreehep-graphicsio-ps-java, libfreehep-graphicsio-svg-
java, libfreehep-graphicsio-swf-java, libitext5-java, libjam-java,
libjebl2-java
Description-en: graphical phylogenetic tree viewer
FigTree is designed as a graphical viewer of phylogenetic trees and as
a program for producing publication-ready figures. In particular it is
designed to display summarized and annotated trees produced by BEAST.
Description-md5: e06f51cdb4e8a7021940de0d58824055
Homepage: http://tree.bio.ed.ac.uk/software/figtree/
Section: science
Priority: optional
Filename: pool/main/f/figtree/figtree_1.4-2_all.deb
Size: 929260
MD5sum: 9ee09ac5695356d88bf0b6f6ef22b1a4
SHA1: 95725e2ae1060fa483e73ca591fc48c66319dbb2
SHA256: 81b3fc3cfbbdb701550b9005f5dbc4c26102f84f391a42405909c2ef7d0d1400
## install
$ sudo apt-get install figtree
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following NEW packages will be installed:
figtree
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/929 kB of archives.
After this operation, 1,053 kB of additional disk space will be used.
Selecting previously unselected package figtree.
(Reading database ... 322762 files and directories currently installed.)
Preparing to unpack .../archives/figtree_1.4-2_all.deb ...
Unpacking figtree (1.4-2) ...
Processing triggers for man-db (2.7.0.2-5) ...
Setting up figtree (1.4-2) ...
## get version information
$ figtree -help
FigTree v1.4.1, 2006-2013
Tree Figure Drawing Tool
Andrew Rambaut
Institute of Evolutionary Biology
University of Edinburgh
a.rambaut at ed.ac.uk
http://tree.bio.ed.ac.uk/
Uses the Java Evolutionary Biology Library (JEBL)
http://jebl.sourceforge.net/
Thanks to Alexei Drummond, Joseph Heled, Philippe Lemey,
Tulio de Oliveira, Oliver Pybus, Beth Shapiro & Marc Suchard
Usage: figtree [-graphic <PDF|SVG|SWF|PS|EMF|GIF>] [-width <i>] [-height <i>]
[-help] [<tree-file-name>] [<graphic-file-name>]
-graphic produce a graphic with the given format
-width the width of the graphic in pixels
-height the height of the graphic in pixels
-help option to print this message
Example: figtree test.tree
Example: figtree -graphic PDF test.tree test.pdf
Example: figtree -graphic GIF -width 320 -height 320 test.tree test.gif
-- System Information:
Debian Release: 8.2
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.16.0-4-amd64 (SMP w/24 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages figtree depends on:
ii jarwrapper 0.48
ii libfreehep-export-java 2.1.1-2
ii libfreehep-graphics2d-java 2.1.1-4
ii libfreehep-graphicsio-emf-java 2.1.1-emfplus+dfsg1-2
ii libfreehep-graphicsio-java 2.1.1-3
ii libfreehep-graphicsio-pdf-java 2.1.1+dfsg-1
ii libfreehep-graphicsio-ps-java 2.1.1-1
ii libfreehep-graphicsio-svg-java 2.1.1-3
ii libfreehep-graphicsio-swf-java 2.1.1+dfsg-1
ii libitext5-java 5.5.3-2
ii libjam-java 0.0.r304-1
ii libjebl2-java 0.0.r22-1
ii openjdk-8-jre [java7-runtime] 8u66-b17-1~bpo8+1
figtree recommends no packages.
figtree suggests no packages.
-- no debconf information
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