[Debian-med-packaging] Bug#800548: bowtie: please add arm64

[Andreas Tille]

Hi Ben,

I received a patch that enables building bowtie on arm64 architecture.
Feel free to include the patch available here

   https://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/debian/patches/enable_arm64.patch?view=markup

in your next upstream version.  I also fixed a spelling issue

   https://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/debian/patches/spelling.patch?view=markup

and you might like to inspect the other patches applied to the Debian
packaging which are all available in SVN

   https://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/debian/patches/

which are in most cases regarding the Debian packaged higher version of
seqan.

Kind regards

      Andreas.

On Wed, Sep 30, 2015 at 07:09:04PM +0100, Edmund Grimley Evans wrote:
> Source: bowtie
> Version: 1.1.2-1
> Tags: patch
> 
> It seems to build on arm64 with just a tiny change on top of
> ppc64el.patch:
> 
> --- bowtie-1.1.2.orig/Makefile
> +++ bowtie-1.1.2/Makefile
> @@ -125,7 +125,7 @@
>  VERSION = $(shell cat VERSION)
>  
>  BITS=32
> -ifneq (,$(filter $(shell uname -m), ppc64le x86_64))
> +ifneq (,$(filter $(shell uname -m), aarch64 ppc64le x86_64))
>         BITS=64
>  endif
>  # msys will always be 32 bit so look at the cpu arch instead.
> --- bowtie-1.1.2.orig/debian/control
> +++ bowtie-1.1.2/debian/control
> @@ -16,7 +16,7 @@
>  Homepage: http://bowtie-bio.sourceforge.net/
>  
>  Package: bowtie
> -Architecture: amd64 kfreebsd-amd64 ppc64el
> +Architecture: amd64 kfreebsd-amd64 arm64 ppc64el
>  Depends: ${shlibs:Depends},
>           ${misc:Depends},
>           python
> 
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