[Debian-med-packaging] Packages dependeing from python-skbio (Was: Bug#800739: ITP: python-burrito-fillings -- burrito application controllers for bioinformatics)

[Andreas Tille]

Hi Tim,

I'm afraid I'm beaten by the same issue as mentioned here

    https://lists.debian.org/debian-med/2015/08/msg00019.html

I get

$ grep "Error.*parse\.sequences" python-burrito-fillings_0.1.1-1_amd64.build 
ImportError: No module named parse.sequences
ImportError: No module named parse.sequences.fasta
ImportError: No module named parse.sequences
ImportError: No module named parse.sequences
ImportError: No module named parse.sequences
ImportError: No module named parse.sequences
ImportError: No module named parse.sequences.fasta
ImportError: No module named parse.sequences
ImportError: No module named parse.sequences
ImportError: No module named parse.sequences
ImportError: No module named parse.sequences.fasta
ImportError: No module named parse.sequences
ImportError: No module named parse.sequences


Do you have any sensible recommendation how to proceed with the
python-skbio package if the packages we are interested in remain
depending on an outdated version?

Kind regards

        Andreas.

On Sat, Oct 03, 2015 at 07:39:26AM +0200, Andreas Tille wrote:
> Package: wnpp
> Severity: wishlist
> Owner: Andreas Tille <tille at debian.org>
> 
> * Package name    : python-burrito-fillings
>   Version         : 0.1.1
>   Upstream Author : burrito development team <gregcaporaso at gmail.com>
> * URL             : https://github.com/biocore/burrito/
> * License         : BSD
>   Programming Lang: Python
>   Description     : burrito application controllers for bioinformatics
>  The burrito-fillings project provides wrappers for bioinformatics tools
>  using the burrito framework.
>  .
>  burrito-fillings (canonically pronounced boar-ee-toe phil-ings; python
>  package name bfillings) contains burrito CommandLineApplication
>  subclasses (i.e., application controllers) for bioinformatics
>  applications. This is intended to be a temporary package for the
>  application controllers that are used in QIIME as we figure out which of
>  these we will continue to support.
> 
> 
> Remark: This precondition to upgrade qiime was prepared by Tim Booth from
> BioLinux in
>    svn://anonscm.debian.org/debian-med/trunk/packages/python-burrito-fillings/trunk/
> and is now taken over by the Debian Med team.
> 
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