[Debian-med-packaging] Help getting missing classes found by prottest

[Andreas Tille]

Hi,

I try to package prottest[1] but I get errors of kind

i    [mkdir] Created dir: /build/prottest-3.4+dfsg/build/empty
    [javac] Compiling 120 source files to /build/prottest-3.4+dfsg/build/classes
    [javac] /build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/ProtTest.java:23: error: package mpi does not exist
    [javac] import mpi.MPI;
    [javac]           ^
    [javac] /build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/ProtTest.java:55: error: package pal.misc does not exist
    [javac] import pal.misc.Identifier;
    [javac]                ^
    [javac] /build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/ProtTest.java:56: error: package pal.tree does not exist
    [javac] import pal.tree.Tree;
    [javac]                ^
    [javac] /build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/util/factory/ProtTestFactory.java:30: error: package pal.alignment does not exist
    [javac] import pal.alignment.Alignment;
    [javac]                     ^
...


I have no idea why neither mpi nor pal classes are found since I tried
to add mpj and pal but obviously failed.

Any help is welcome

      Andreas.


[1] git://anonscm.debian.org/debian-med/prottest.git

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