[Debian-med-packaging] Bug#799698: samtools: Unknown command "faidx" on (kfreebsd-)i386

[Aaron M. Ucko]

Package: samtools
Version: 1.2-2
Severity: serious
Justification: fails to build from source

Builds of python-pysam for i386 and kfreebsd-i386 failed:

   samtools faidx ex1.fa
   Unknown command "faidx".

This error appears to indicate a deficiency in samtools; could you
please take a look?

Thanks!