[Debian-med-packaging] BioPython unit tests: Tutorial

Andreas Tille andreas at an3as.eu
Wed Sep 23 12:42:58 UTC 2015


Hi,

I try to activate all possible tests of BioPython at Debian package
build time but I found some issues.  I will discuss these in separate
mails, starting with test_Tutorial and python2.7:

======================================================================
ERROR: test_doctests (test_Tutorial.TutorialTestCase)
Run tutorial doctests.
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Traceback (most recent call last):
  File "/tmp/buildd/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Tests/test_Tutorial.py", line 175, in test_doctests
    (len(failures), ", ".join(failures)))
ValueError: 23 Tutorial doctests failed: test_chapter_align_line_00074, test_chapter_align_line_00097, test_chapter_align_line_00645, test_chapter_align_line_00814, test_chapter_align_line_00976, test_chapter_align_line_00996, test_chapter_align_line_01240, test_chapter_cookbook_line_01492, test_chapter_phylo_line_00040, test_chapter_phylo_line_00074, test_chapter_searchio_line_00126, test_chapter_searchio_line_00485, test_chapter_searchio_line_00642, test_chapter_searchio_line_00928, test_chapter_seqio_line_00289, test_chapter_seqio_line_00300, test_chapter_seqio_line_00311, test_chapter_seqio_line_00522, test_chapter_seqio_line_00641, test_chapter_seqio_line_00674, test_chapter_seqio_line_00864, test_chapter_seqio_line_00883, test_chapter_seqio_line_01124

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Unfortunately I have no idea how to deal with this.  Any hint?

Kind regards

        Andreas.

-- 
http://fam-tille.de



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