[Debian-med-packaging] Bug#789829: Debian packaged seqprep fails on i386 architecture (Was: Bug#789829: seqprep: FTBFS on *i386: pe_*.txt checksum mismatch)

[Graham Inggs]

Hi Andreas

On 27 September 2015 at 21:50, Andreas Tille <tille at debian.org> wrote:
> ...gcc  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -Wall -Werror -O0 -g SeqPrep.c -o SeqPrep.o
> SeqPrep.c:108:5: error: 'spcount' is static but used in inline function 'update_spinner' which is not static [-Werror]
>      spcount++;
>      ^
> SeqPrep.c:90:12: error: 'spcount' is static but used in inline function 'update_spinner' which is not static [-Werror]
>      switch(spcount % 4){
>             ^
> In file included from SeqPrep.c:10:0:
> utils.h:80:13: error: inline function 'rev_qual' declared but never defined [-Werror]
>  inline void rev_qual( char q[], int len );
>              ^
>
> How did you managed to build at all?

To get it to build with gcc5, I did the following (and a little bit of
extra cleaning):

--- seqprep-1.1/debian/rules    2015-06-21 17:12:26.000000000 +0200
+++ seqprep-1.1/debian/rules    2015-09-27 23:20:29.000000000 +0200
@@ -1,6 +1,8 @@
 #!/usr/bin/make -f
 #export DH_VERBOSE=1

+export DEB_CFLAGS_MAINT_APPEND=-std=gnu90
+
 %:
     dh $@

@@ -14,6 +16,7 @@
     dh_clean
     rm -f seqprep
     rm -f debian/*.1
+    rm -f README.html

Regards
Graham