[Debian-med-packaging] Upgrading picard-tools

[Andreas Tille]

Hi Vincent,

I checked the situation with htsjdk and noticed that the latest upstream
version is not in / pushed to pristine-tar.  Could you please update
the repository and may be explain what might be the show-stopper for
upgrading this package?

Kind regards

      Andreas.

On Mon, Mar 14, 2016 at 11:25:35PM +0100, Vincent Danjean wrote:
>   Hi,
> 
> Le 13/03/2016 12:27, Andreas Tille a écrit :
> > There is a remaining build error which should be probably easy to fix
> > by --source 1.7 (Java 1.5 does not know <> diamond operator according
> > to the error message I've got).
> 
>   In fact, 1.8 is required (due to lambda expressions according to
> the next error message)
>   And htsjdk must be (at least) at the same version
> => I added (build)dependencies on libhtsjdk-java (>= 2.1.1),
>    should we also add libhtsjdk-java (<< 2.1.2)
>                    or libhtsjdk-java (<< 2.2)
>                    or ... ?
> 
>   I also copied the few lines from htsjdk to run the tests without
> the jacoco tools.
>   All tests pass (in C locale, not in my French locale => an upstream
> bug with floating point number representation)
> 
> > I'll keep my hands now away from it and wait for further messages.
> 
>   Now, I've a error with the "mh_installjar" invocation in debian/rules.
> But I will stop here for today...
> 
>   Regards,
>     Vincent
> 
> > 
> > Kind regards
> > 
> >      Andreas.
> > 
> 
> 

-- 
http://fam-tille.de