[Debian-med-packaging] Bug#820851: ITP: sprai -- single-pass sequencing read accuracy improver

Afif Elghraoui afif at debian.org
Wed Apr 13 05:13:51 UTC 2016


Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>

* Package name    : sprai
  Version         : 0.9.9.12
  Upstream Author : Takamasa Imai <imai at cb.k.u-tokyo.ac.jp>
* URL             : http://zombie.cb.k.u-tokyo.ac.jp/sprai/index.html
* License         : MIT
  Programming Lang: C, Perl, Python
  Description     : single-pass sequencing read accuracy improver

 Sprai is a tool to correct sequencing errors in single-pass reads for
 de novo assembly. It is originally designed for correcting sequencing
 errors in single-molecule DNA sequencing reads, especially in Continuous
 Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is
 not maximizing the accuracy of error-corrected reads. Instead, Sprai aims
 at maximizing the continuity (i.e., N50 contig length) of assembled contigs
 after error correction.

This package will be maintained by the Debian Med team.



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