[Debian-med-packaging] Bug#822776: ITP: maffilter -- process genome alignment in the Multiple Alignment Format

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>

* Package name    : maffilter
  Version         : 1.1.0
  Upstream Author : Julien Dutheil <julien.dutheil at univ-montp2.fr>
* URL             : http://biopp.univ-montp2.fr/repos/sources/maffilter/
* License         : CeCILL
  Programming Lang: C++
  Description     : process genome alignment in the Multiple Alignment Format
 MafFilter applies a series of "filters" to a MAF file, in order to
 clean it, extract data and computer statistics while keeping track of
 the associated meta-data such as genome coordinates and quality scores.
 .
  * It can process the alignment to remove low-quality / ambiguous /
    masked regions.
  * It can export data into a single or multiple alignment file in
    format such as Fasta or Clustal.
  * It can read annotation data in GFF or GTF format, and extract the
    corresponding alignment.
  * It can perform sliding windows calculations.
  * It can reconstruct phylogeny/genealogy along the genome alignment.
  * It can compute population genetics statistics, such as site
    frequency spectrum, number of fixed/polymorphic sites, etc.


This package will be maintained by the Debian Med team at
    https://anonscm.debian.org/git/debian-med/maffilter.git