[Debian-med-packaging] libbpp-phyl-omics_2.2.0-1_amd64.changes ACCEPTED into unstable, unstable

Wed Apr 27 19:00:06 UTC 2016

Dear Andreas,

Thanks a lot! As for the tests: by "external" I did not mean "online"...
these files are regular text files provided along with the test code. Their
are assessed using their relative path from the cpp file of the test. The
test fails because it cannot find the file. My suggestion was to have the
test to write the file and then read it instead, to avoid the path issue.

Best,

Julien.

On Wed, Apr 27, 2016 at 7:24 PM, Andreas Tille <andreas at an3as.eu> wrote:

> Hi Julien,
>
> I'd like to confirm that now all libbpp-* packages are updated and in
> unstable.  I plan to backport these to Jessie since I need maffilter (in
> new queue) for a Jessie system.
>
> Regarding the test suites that are failing in some packages:  I think
> you wrote that you plan to disable tests accessing external files.
> (Hmmm, I can't find this mail any more.  Please make sure you *always*
> write to this mailing list when discussing packaging topics.  You are
> listed as Uploader of the package and the team == maintainer of the
> package should know.  Than we have a publicly searchable record and no
> information will get lost.)  I can confirm that accessing *external*
> files will fail definitely since packages will be build inside a chroot
> that is not connected to the internet.  However, as far as I remember
> some issues also appeared when trying to access local files.  Please
> make sure that these tests will pass.  May be add some more debugging
> output and lets track down what might be the issue for failed tests.
>
> Kind regards
>
>        Andreas.
>
> On Wed, Apr 27, 2016 at 10:00:29AM +0000, Debian FTP Masters wrote:
> >
> >
> > Accepted:
> >
> > -----BEGIN PGP SIGNED MESSAGE-----
> > Hash: SHA256
> >
> > Format: 1.8
> > Date: Sat, 23 Apr 2016 14:32:11 +0200
> > Source: libbpp-phyl-omics
> > Binary: libbpp-phyl-omics-dev libbpp-phyl-omics1v5
> > Architecture: source amd64
> > Version: 2.2.0-1
> > Distribution: unstable
> > Urgency: medium
> > Maintainer: Debian Med Packaging Team <
> debian-med-packaging at lists.alioth.debian.org>
> > Changed-By: Andreas Tille <tille at debian.org>
> > Description:
> >  libbpp-phyl-omics-dev - Bio++ Phylogenetics library: genomics
> components (development fil
> >  libbpp-phyl-omics1v5 - Bio++ Phylogenetics library: genomics components
> > Closes: 791095
> > Changes:
> >  libbpp-phyl-omics (2.2.0-1) unstable; urgency=medium
> >  .
> >    * New upstream version
> >    * Moved packaging to Git
> >    * Better description
> >    * Add watch file
> >    * Team maintenance in Debian Med team
> >    * cme fix dpkg-control
> >    * Source package in Section: science
> >    * debhelper 9
> >    * DEP5
> >    * short dh rules file using d-shlibs
> >    * Library transition
> >      Closes: #791095
> > Checksums-Sha1:
> >  1486fef256ddc21b85dfc58c797731f2d25abdcd 2221
> libbpp-phyl-omics_2.2.0-1.dsc
> >  aa85bcae12807f54c9b173aa44ca8b92ce8d5bfc 47215
> libbpp-phyl-omics_2.2.0.orig.tar.gz
> >  0f75a2cddd2ad8cb87bb751d339d0f1cc46d52b1 3708
> libbpp-phyl-omics_2.2.0-1.debian.tar.xz
> >  00587cf85e6e84db2c1f443b785cfe8ae87c6011 125900
> libbpp-phyl-omics-dev_2.2.0-1_amd64.deb
> >  a8dec79cc8e9d726ccb50086b79674c2e8f729e1 20452
> libbpp-phyl-omics1v5-dbgsym_2.2.0-1_amd64.deb
> >  e08b4b01d5ec5b09cada31a2f34455822a7f9405 67372
> libbpp-phyl-omics1v5_2.2.0-1_amd64.deb
> > Checksums-Sha256:
> >  242d5b53734fc28bc99d3593ab54a108cd0ca7a2dd64335ec5394fa6615784f3 2221
> libbpp-phyl-omics_2.2.0-1.dsc
> >  a48f4c6f0ea1758c1f6dc8a262d5cbad95769739d46ce9af08527107a548bfaa 47215
> libbpp-phyl-omics_2.2.0.orig.tar.gz
> >  6b2bbd695974bec4a9ad13e4d79b89d751c4ed4e4a1f8d7275c88b8bf432759c 3708
> libbpp-phyl-omics_2.2.0-1.debian.tar.xz
> >  4520055b13d582f78d0f4564a25cdfb5a764546fbfa29694de7a3d18815f2128 125900
> libbpp-phyl-omics-dev_2.2.0-1_amd64.deb
> >  cac3a13477859d41a67909c0ce2022e5e4f42447de291d2ded4806231c9a8b74 20452
> libbpp-phyl-omics1v5-dbgsym_2.2.0-1_amd64.deb
> >  9440690ea5ee92cacd6159281fb7c013685004ebb02729aeb8a8ae5d51e82983 67372
> libbpp-phyl-omics1v5_2.2.0-1_amd64.deb
> > Files:
> >  e3314197e35ca3935d445bed852331b0 2221 science optional
> libbpp-phyl-omics_2.2.0-1.dsc
> >  5f1be1241641d8777481b9933ba30ed1 47215 science optional
> libbpp-phyl-omics_2.2.0.orig.tar.gz
> >  25deab7e4c3fbf1e69d57cf22ce2c9a9 3708 science optional
> libbpp-phyl-omics_2.2.0-1.debian.tar.xz
> >  3af8799008273566617f889abbe99632 125900 libdevel optional
> libbpp-phyl-omics-dev_2.2.0-1_amd64.deb
> >  bc3cd7ff72e4d847cea9143494854659 20452 debug extra
> libbpp-phyl-omics1v5-dbgsym_2.2.0-1_amd64.deb
> >  20aac51820584fbe43f2e8149a15b527 67372 libs optional
> libbpp-phyl-omics1v5_2.2.0-1_amd64.deb
> >
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> >
> >
> > Thank you for your contribution to Debian.
> >
> > _______________________________________________
> > Debian-med-packaging mailing list
> > Debian-med-packaging at lists.alioth.debian.org
> >
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
> >
>
> --
> http://fam-tille.de
>

-- 
Julien Y. Dutheil, Ph-D
0 (+49) 6421 178 986

§ Max Planck Institute for Evolutionary Biology
Molecular Systems Evolution
Department of Evolutionary Genetics
Plön -- GERMANY

§ Institute of Evolutionary Sciences - Montpellier
University of Montpellier 2 -- FRANCE
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