[Debian-med-packaging] Bug#833515: alter-sequence-alignment: FTBFS: failed to create task or type foreach

Andreas Tille andreas at an3as.eu
Fri Aug 5 14:14:16 UTC 2016 

Hi Java team,

since I do not have the slightest idea why the package which has built
once does not build any more I'd like to forward this bug to ask for
your kind help.

Kind regards

       Andreas.

On Fri, Aug 05, 2016 at 12:46:20PM +0200, Chris Lamb wrote:
> Source: alter-sequence-alignment
> Version: 1.3.3+dfsg-1
> Severity: serious
> Justification: fails to build from source
> User: reproducible-builds at lists.alioth.debian.org
> Usertags: ftbfs
> X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org
> 
> Dear Maintainer,
> 
> alter-sequence-alignment fails to build from source in unstable/amd64:
> 
>   [..]
> 
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
>   Setting up openjdk-8-jre:amd64 (8u102-b14.1-1) ...
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
>   Setting up ant (1.9.7-3) ...
>   Setting up javacc (5.0-5) ...
>   Setting up default-jre-headless (2:1.8-57) ...
>   Setting up default-jdk-headless (2:1.8-57) ...
>   Setting up openjdk-8-jdk:amd64 (8u102-b14.1-1) ...
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
>   update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
>   Setting up default-jre (2:1.8-57) ...
>   Setting up ant-contrib (1.0~b3+svn177-8) ...
>   Setting up default-jdk (2:1.8-57) ...
>   Setting up alter-sequence-alignment-build-deps (1.3.3+dfsg-1) ...
>   Processing triggers for libc-bin (2.23-4) ...
>   Processing triggers for systemd (231-1) ...
>   Processing triggers for ca-certificates (20160104) ...
>   Updating certificates in /etc/ssl/certs...
>   173 added, 0 removed; done.
>   Running hooks in /etc/ca-certificates/update.d...
>   
>   Adding debian:ACCVRAIZ1.pem
>   Adding debian:ACEDICOM_Root.pem
>   Adding debian:AC_Raíz_Certicámara_S.A..pem
>   Adding debian:Actalis_Authentication_Root_CA.pem
>   Adding debian:AddTrust_External_Root.pem
>   Adding debian:AddTrust_Low-Value_Services_Root.pem
>   Adding debian:AddTrust_Public_Services_Root.pem
>   Adding debian:AddTrust_Qualified_Certificates_Root.pem
>   Adding debian:AffirmTrust_Commercial.pem
>   Adding debian:AffirmTrust_Networking.pem
>   Adding debian:AffirmTrust_Premium.pem
>   Adding debian:AffirmTrust_Premium_ECC.pem
>   Adding debian:ApplicationCA_-_Japanese_Government.pem
>   Adding debian:Atos_TrustedRoot_2011.pem
>   Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
>   Adding debian:Baltimore_CyberTrust_Root.pem
>   Adding debian:Buypass_Class_2_CA_1.pem
>   Adding debian:Buypass_Class_2_Root_CA.pem
>   Adding debian:Buypass_Class_3_Root_CA.pem
>   Adding debian:CA_Disig.pem
>   Adding debian:CA_Disig_Root_R1.pem
>   Adding debian:CA_Disig_Root_R2.pem
>   Adding debian:CA_WoSign_ECC_Root.pem
>   Adding debian:CFCA_EV_ROOT.pem
>   Adding debian:CNNIC_ROOT.pem
>   Adding debian:COMODO_Certification_Authority.pem
>   Adding debian:COMODO_ECC_Certification_Authority.pem
>   Adding debian:COMODO_RSA_Certification_Authority.pem
>   Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
>   Adding debian:Camerfirma_Global_Chambersign_Root.pem
>   Adding debian:Certification_Authority_of_WoSign_G2.pem
>   Adding debian:Certigna.pem
>   Adding debian:Certinomis_-_Autorité_Racine.pem
>   Adding debian:Certinomis_-_Root_CA.pem
>   Adding debian:Certplus_Class_2_Primary_CA.pem
>   Adding debian:Certum_Root_CA.pem
>   Adding debian:Certum_Trusted_Network_CA.pem
>   Adding debian:Chambers_of_Commerce_Root_-_2008.pem
>   Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
>   Adding debian:ComSign_CA.pem
>   Adding debian:Comodo_AAA_Services_root.pem
>   Adding debian:Comodo_Secure_Services_root.pem
>   Adding debian:Comodo_Trusted_Services_root.pem
>   Adding debian:Cybertrust_Global_Root.pem
>   Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
>   Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
>   Adding debian:DST_ACES_CA_X6.pem
>   Adding debian:DST_Root_CA_X3.pem
>   Adding debian:Deutsche_Telekom_Root_CA_2.pem
>   Adding debian:DigiCert_Assured_ID_Root_CA.pem
>   Adding debian:DigiCert_Assured_ID_Root_G2.pem
>   Adding debian:DigiCert_Assured_ID_Root_G3.pem
>   Adding debian:DigiCert_Global_Root_CA.pem
>   Adding debian:DigiCert_Global_Root_G2.pem
>   Adding debian:DigiCert_Global_Root_G3.pem
>   Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
>   Adding debian:DigiCert_Trusted_Root_G4.pem
>   Adding debian:E-Tugra_Certification_Authority.pem
>   Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
>   Adding debian:EC-ACC.pem
>   Adding debian:EE_Certification_Centre_Root_CA.pem
>   Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
>   Adding debian:Entrust_Root_Certification_Authority.pem
>   Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
>   Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
>   Adding debian:Equifax_Secure_CA.pem
>   Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
>   Adding debian:Equifax_Secure_eBusiness_CA_1.pem
>   Adding debian:GeoTrust_Global_CA.pem
>   Adding debian:GeoTrust_Global_CA_2.pem
>   Adding debian:GeoTrust_Primary_Certification_Authority.pem
>   Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
>   Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
>   Adding debian:GeoTrust_Universal_CA.pem
>   Adding debian:GeoTrust_Universal_CA_2.pem
>   Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
>   Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
>   Adding debian:GlobalSign_Root_CA.pem
>   Adding debian:GlobalSign_Root_CA_-_R2.pem
>   Adding debian:GlobalSign_Root_CA_-_R3.pem
>   Adding debian:Global_Chambersign_Root_-_2008.pem
>   Adding debian:Go_Daddy_Class_2_CA.pem
>   Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
>   Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
>   Adding debian:Hongkong_Post_Root_CA_1.pem
>   Adding debian:IGC_A.pem
>   Adding debian:IdenTrust_Commercial_Root_CA_1.pem
>   Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
>   Adding debian:Izenpe.com.pem
>   Adding debian:Juur-SK.pem
>   Adding debian:Microsec_e-Szigno_Root_CA.pem
>   Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
>   Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
>   Adding debian:NetLock_Business_=Class_B=_Root.pem
>   Adding debian:NetLock_Express_=Class_C=_Root.pem
>   Adding debian:NetLock_Notary_=Class_A=_Root.pem
>   Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
>   Adding debian:Network_Solutions_Certificate_Authority.pem
>   Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
>   Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
>   Adding debian:PSCProcert.pem
>   Adding debian:QuoVadis_Root_CA.pem
>   Adding debian:QuoVadis_Root_CA_1_G3.pem
>   Adding debian:QuoVadis_Root_CA_2.pem
>   Adding debian:QuoVadis_Root_CA_2_G3.pem
>   Adding debian:QuoVadis_Root_CA_3.pem
>   Adding debian:QuoVadis_Root_CA_3_G3.pem
>   Adding debian:RSA_Security_2048_v3.pem
>   Adding debian:Root_CA_Generalitat_Valenciana.pem
>   Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
>   Adding debian:S-TRUST_Universal_Root_CA.pem
>   Adding debian:SecureSign_RootCA11.pem
>   Adding debian:SecureTrust_CA.pem
>   Adding debian:Secure_Global_CA.pem
>   Adding debian:Security_Communication_EV_RootCA1.pem
>   Adding debian:Security_Communication_RootCA2.pem
>   Adding debian:Security_Communication_Root_CA.pem
>   Adding debian:Sonera_Class_1_Root_CA.pem
>   Adding debian:Sonera_Class_2_Root_CA.pem
>   Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
>   Adding debian:Staat_der_Nederlanden_Root_CA.pem
>   Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
>   Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
>   Adding debian:Starfield_Class_2_CA.pem
>   Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
>   Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
>   Adding debian:StartCom_Certification_Authority.pem
>   Adding debian:StartCom_Certification_Authority_2.pem
>   Adding debian:StartCom_Certification_Authority_G2.pem
>   Adding debian:SwissSign_Gold_CA_-_G2.pem
>   Adding debian:SwissSign_Platinum_CA_-_G2.pem
>   Adding debian:SwissSign_Silver_CA_-_G2.pem
>   Adding debian:Swisscom_Root_CA_1.pem
>   Adding debian:Swisscom_Root_CA_2.pem
>   Adding debian:Swisscom_Root_EV_CA_2.pem
>   Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
>   Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
>   Adding debian:TC_TrustCenter_Class_3_CA_II.pem
>   Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
>   Adding debian:TWCA_Global_Root_CA.pem
>   Adding debian:TWCA_Root_Certification_Authority.pem
>   Adding debian:Taiwan_GRCA.pem
>   Adding debian:TeliaSonera_Root_CA_v1.pem
>   Adding debian:Trustis_FPS_Root_CA.pem
>   Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
>   Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem
>   Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H6.pem
>   Adding debian:USERTrust_ECC_Certification_Authority.pem
>   Adding debian:USERTrust_RSA_Certification_Authority.pem
>   Adding debian:UTN_USERFirst_Email_Root_CA.pem
>   Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
>   Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
>   Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
>   Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
>   Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
>   Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
>   Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
>   Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
>   Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
>   Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
>   Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
>   Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
>   Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem
>   Adding debian:Visa_eCommerce_Root.pem
>   Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
>   Adding debian:WoSign.pem
>   Adding debian:WoSign_China.pem
>   Adding debian:XRamp_Global_CA_Root.pem
>   Adding debian:certSIGN_ROOT_CA.pem
>   Adding debian:ePKI_Root_Certification_Authority.pem
>   Adding debian:thawte_Primary_Root_CA.pem
>   Adding debian:thawte_Primary_Root_CA_-_G2.pem
>   Adding debian:thawte_Primary_Root_CA_-_G3.pem
>   done.
>   done.
>   Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.34.0-1) ...
>   
>   **************************************************************************************
>   ** Environment                                                                      **
>   **************************************************************************************
>   
>   PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
>   HOSTNAME=6380be5ce088
>   TERM=xterm
>   PAGER=more
>   DISPLAY=:0
>   DOCKER_IMAGE=lamby-debian-sid
>   DEB_BUILD_OPTIONS=parallel=9
>   PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
>   HOME=/home/lamby
>   LOGNAME=lamby
>   SHLVL=1
>   PWD=/home/lamby/temp/cdt.20160805114201.z3HVWv8yoY.alter-sequence-alignment/alter-sequence-alignment-1.3.3+dfsg
>   OLDPWD=/home/lamby/temp/cdt.20160805114201.z3HVWv8yoY.alter-sequence-alignment
>   GPG_TTY=/dev/console
>   QUILT_PATCHES=debian/patches
>   QUILT_NO_DIFF_INDEX=1
>   QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
>   DEBEMAIL=lamby at debian.org
>   DEBFULLNAME=Chris Lamb
>   EDITOR=vim
>   LESS=-cgiFx4M
>   GPG_KEY=1E953E27D4311E58
>   BLASTER=A220 I5 D1 H5 P330 T6
>   _=/usr/bin/env
>   
>   **************************************************************************************
>   ** Building alter-sequence-alignment 1.3.3+dfsg-1 on amd64                          **
>   **************************************************************************************
>   
>    dpkg-buildpackage -rfakeroot -D -us -uc -b
>   dpkg-buildpackage: info: source package alter-sequence-alignment
>   dpkg-buildpackage: info: source version 1.3.3+dfsg-1
>   dpkg-buildpackage: info: source distribution unstable
>   dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
>    dpkg-source --before-build alter-sequence-alignment-1.3.3+dfsg
>   dpkg-buildpackage: info: host architecture amd64
>    fakeroot debian/rules clean
>   dh clean --with javahelper
>      dh_testdir
>      dh_auto_clean
>   	ant clean
>   Buildfile: /home/lamby/temp/cdt.20160805114201.z3HVWv8yoY.alter-sequence-alignment/alter-sequence-alignment-1.3.3+dfsg/build.xml
>   
>   clean:
>     [taskdef] Could not load definitions from resource net/sf/antcontrib/antcontrib.properties. It could not be found.
>   
>   clean:
>   
>   BUILD SUCCESSFUL
>   Total time: 0 seconds
>      jh_clean
>      dh_clean
>    debian/rules build
>   dh build --with javahelper
>      dh_testdir
>      dh_update_autotools_config
>      dh_auto_configure
>      jh_linkjars
>      dh_auto_build
>   	ant -Duser.name debian
>   Buildfile: /home/lamby/temp/cdt.20160805114201.z3HVWv8yoY.alter-sequence-alignment/alter-sequence-alignment-1.3.3+dfsg/build.xml
>   
>   buildlib:
>     [taskdef] Could not load definitions from resource net/sf/antcontrib/antcontrib.properties. It could not be found.
>   
>   clean:
>   
>   javacc:
>   
>   BUILD FAILED
>   /home/lamby/temp/cdt.20160805114201.z3HVWv8yoY.alter-sequence-alignment/alter-sequence-alignment-1.3.3+dfsg/build.xml:5: The following error occurred while executing this line:
>   /home/lamby/temp/cdt.20160805114201.z3HVWv8yoY.alter-sequence-alignment/alter-sequence-alignment-1.3.3+dfsg/alter-lib/build.xml:32: Problem: failed to create task or type foreach
>   Cause: The name is undefined.
>   Action: Check the spelling.
>   Action: Check that any custom tasks/types have been declared.
>   Action: Check that any <presetdef>/<macrodef> declarations have taken place.
>   
>   
>   Total time: 0 seconds
>   dh_auto_build: ant -Duser.name debian returned exit code 1
>   debian/rules:6: recipe for target 'build' failed
>   make: *** [build] Error 2
> 
>   [..]
> 
> The full build log is attached.
> 
> 
> Regards,
> 
> -- 
>       ,''`.
>      : :'  :     Chris Lamb
>      `. `'`      lamby at debian.org / chris-lamb.co.uk
>        `-


> _______________________________________________
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> Debian-med-packaging at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging


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