[Debian-med-packaging] Ups, pbuilder chroot broken - here comes the real build error (Was: New version of phyml: Can't exec "gcc": No such file or directory)

[Andreas Tille]

Hi James,

On Wed, Aug 17, 2016 at 01:55:23PM +0100, James Cowgill wrote:
> 
> I think there might be something up with your pbuilder chroot.s

After updating this the strange error vanished - sorry for the noise.

> At least
> the initial stages of the build work fine for me with sbuild (gcc errors
> out later though).

So lets come to the real build errors of [1]: I just fixed the first issue
in a new patch (please git pull) but I do not understand this one:

...
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -O2 -msse -fomit-frame-pointer -funroll-loops -Wempty-body -Wuninitialized  -I/usr/include/libhmsbeagle-1 -lhmsbeagle -ldl  -c -o lk.o lk.c
lk.c: In function 'Update_PMat_At_Given_Edge':
lk.c:2449:31: error: invalid initializer
       int p_matrices[1]     = b_fcus->Pij_rr_idx;
                               ^~~~~~
lk.c:2450:31: error: invalid initializer
       double branch_lens[1] = len;
                               ^~~
Makefile:1847: recipe for target 'lk.o' failed
make[4]: *** [lk.o] Error 1
...


Any idea?

Kind regards

      Andreas.


[1] https://anonscm.debian.org/git/debian-med/phyml.git

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