[Debian-med-packaging] Bug#835283: snap: FTBFS: exonpairs.c:86:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
Chris Lamb
lamby at debian.org
Wed Aug 24 07:53:18 UTC 2016
Source: snap
Version: 2013-11-29-3
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org
Dear Maintainer,
snap fails to build from source in unstable/amd64:
[..]
**************************************************************************************
** Starting build **
**************************************************************************************
Package: snap
Version: 2013-11-29-3
Build architecture: amd64
Date: Wed, 24 Aug 2016 08:45:19 +0100
Hostname: 1dec81a9ff7c
Uname: Linux 1dec81a9ff7c 4.6.0-1-amd64 #1 SMP Debian 4.6.4-1 (2016-07-18) x86_64 GNU/Linux
/etc/timezone: Europe/London
**************************************************************************************
** Installing build dependencies **
**************************************************************************************
dh_testdir
dh_testroot
dh_prep
dh_testdir
dh_testroot
dh_install
dh_installdocs
dh_installchangelogs
dh_compress
dh_fixperms
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'snap-build-deps' in '../snap-build-deps_2013-11-29-3_all.deb'.
The package has been created.
Attention, the package has been created in the current directory,
not in ".." as indicated by the message above!
Selecting previously unselected package snap-build-deps.
(Reading database ... 23244 files and directories currently installed.)
Preparing to unpack snap-build-deps_2013-11-29-3_all.deb ...
Unpacking snap-build-deps (2013-11-29-3) ...
Reading package lists...
Building dependency tree...
Reading state information...
Correcting dependencies... Done
The following additional packages will be installed:
help2man
The following NEW packages will be installed:
help2man
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
1 not fully installed or removed.
Need to get 162 kB of archives.
After this operation, 465 kB of additional disk space will be used.
Get:1 http://httpredir.debian.org/debian sid/main amd64 help2man amd64 1.47.4 [162 kB]
Fetched 162 kB in 0s (12.9 MB/s)
Selecting previously unselected package help2man.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
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(Reading database ... 25%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 23248 files and directories currently installed.)
Preparing to unpack .../help2man_1.47.4_amd64.deb ...
Unpacking help2man (1.47.4) ...
Setting up help2man (1.47.4) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up snap-build-deps (2013-11-29-3) ...
**************************************************************************************
** Environment **
**************************************************************************************
PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
HOSTNAME=1dec81a9ff7c
TERM=xterm
PAGER=more
DISPLAY=:0
DOCKER_IMAGE=lamby-debian-sid
DEB_BUILD_OPTIONS=parallel=9
PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
HOME=/home/lamby
LOGNAME=lamby
SHLVL=1
PWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29
OLDPWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap
GPG_TTY=/dev/console
QUILT_PATCHES=debian/patches
QUILT_NO_DIFF_INDEX=1
QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
DEBEMAIL=lamby at debian.org
DEBFULLNAME=Chris Lamb
EDITOR=vim
LESS=-cgiFx4M
GPG_KEY=1E953E27D4311E58
BLASTER=A220 I5 D1 H5 P330 T6
_=/usr/bin/env
**************************************************************************************
** Building snap 2013-11-29-3 on amd64 **
**************************************************************************************
dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: info: source package snap
dpkg-buildpackage: info: source version 2013-11-29-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Sascha Steinbiss <satta at debian.org>
dpkg-source --before-build snap-2013-11-29
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
dh clean
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
touch depend Zoe/depend
dh_auto_clean
make -j1 clean
make[2]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
rm -f *.o snap fathom forge hmm-info exonpairs
cd Zoe; make clean
make[3]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
rm -f *.o zoe-loop lexica seqedit seqstats twinkle
make[3]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make[2]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
if [ -f depend.orig ] ; then mv depend.orig depend; fi
if [ -f Zoe/depend.orig ] ; then mv Zoe/depend.orig Zoe/depend; fi
make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
dh_clean
debian/rules build
dh build
dh_testdir
dh_update_autotools_config
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
dh_auto_build CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-fPIE -pie -Wl,-z,relro -Wl,-z,now"
make -j1
make[2]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make gcc
make[3]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
cd Zoe; make CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security";
make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make gcc CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[5]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make zoe-loop CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[6]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoe-loop.o zoe-loop.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeAlignment.o zoeAlignment.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCDS.o zoeCDS.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCounter.o zoeCounter.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDNA.o zoeDNA.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDistribution.o zoeDistribution.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDuration.o zoeDuration.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFastaFile.o zoeFastaFile.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeature.o zoeFeature.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureFactory.o zoeFeatureFactory.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureTable.o zoeFeatureTable.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeHMM.o zoeHMM.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeIsochore.o zoeIsochore.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeMath.o zoeMath.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeModel.o zoeModel.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoePhasePref.o zoePhasePref.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeProtein.o zoeProtein.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeScanner.o zoeScanner.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeState.o zoeState.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTools.o zoeTools.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTransition.o zoeTransition.c
cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTrellis.o zoeTrellis.c
cc -o zoe-loop -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 zoe-loop.o zoeAlignment.o zoeCDS.o zoeCounter.o zoeDNA.o zoeDistribution.o zoeDuration.o zoeFastaFile.o zoeFeature.o zoeFeatureFactory.o zoeFeatureTable.o zoeHMM.o zoeIsochore.o zoeMath.o zoeModel.o zoePhasePref.o zoeProtein.o zoeScanner.o zoeState.o zoeTools.o zoeTransition.o zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[6]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make[5]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make snap CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o snap.o snap.c
gcc -o snap -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 snap.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make fathom CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o fathom.o fathom.c
gcc -o fathom -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 fathom.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make forge CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o forge.o forge.c
gcc -o forge -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 forge.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make hmm-info CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o hmm-info.o hmm-info.c
gcc -o hmm-info -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 hmm-info.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make exonpairs CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o exonpairs.o exonpairs.c
exonpairs.c: In function 'get_exons':
exonpairs.c:86:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
if (exon->score < MIN_EINIT_SCORE) skip = 1; break;
^~
exonpairs.c:86:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
if (exon->score < MIN_EINIT_SCORE) skip = 1; break;
^~~~~
exonpairs.c:87:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
if (length < MIN_EINIT_LENGTH) skip = 1; break;
^~
exonpairs.c:87:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
if (length < MIN_EINIT_LENGTH) skip = 1; break;
^~~~~
exonpairs.c:89:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
if (exon->score < MIN_ETERM_SCORE) skip = 1; break;
^~
exonpairs.c:89:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
if (exon->score < MIN_ETERM_SCORE) skip = 1; break;
^~~~~
exonpairs.c:90:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
if (length < MIN_ETERM_LENGTH) skip = 1; break;
^~
exonpairs.c:90:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
if (length < MIN_ETERM_LENGTH) skip = 1; break;
^~~~~
exonpairs.c:92:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
if (exon->score < MIN_EXON_SCORE) skip = 1; break;
^~
exonpairs.c:92:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
if (exon->score < MIN_EXON_SCORE) skip = 1; break;
^~~~~
exonpairs.c:93:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
if (length < MIN_EXON_LENGTH) skip = 1; break;
^~
exonpairs.c:93:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
if (length < MIN_EXON_LENGTH) skip = 1; break;
^~~~~
cc1: all warnings being treated as errors
Makefile:111: recipe for target 'exonpairs.o' failed
make[4]: *** [exonpairs.o] Error 1
make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
Makefile:98: recipe for target 'gcc' failed
make[3]: *** [gcc] Error 2
make[3]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
Makefile:60: recipe for target 'default' failed
make[2]: *** [default] Error 2
make[2]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
dh_auto_build: make -j1 returned exit code 2
debian/rules:30: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
debian/rules:16: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` lamby at debian.org / chris-lamb.co.uk
`-
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