[Debian-med-packaging] Bug#835674: macs: FTBFS: MACS2/IO/PeakIO.c:1:2: error: #error Do not use this file, it is the result of a failed Cython compilation.

[Lucas Nussbaum]

Source: macs
Version: 2.1.1.20160309-1
Severity: serious
Tags: stretch sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20160828 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/PeakIO.c -o build/temp.linux-x86_64-2.7/MACS2/IO/PeakIO.o -w -O3 -ffast-math
> MACS2/IO/PeakIO.c:1:2: error: #error Do not use this file, it is the result of a failed Cython compilation.
>  #error Do not use this file, it is the result of a failed Cython compilation.
>   ^~~~~
> error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
> E: pybuild pybuild:276: build: plugin distutils failed with: exit code=1: /usr/bin/python setup.py build 
> dh_auto_build: pybuild --build -i python{version} -p 2.7 returned exit code 13
> debian/rules:16: recipe for target 'override_dh_auto_build' failed
> make[1]: *** [override_dh_auto_build] Error 25

The full build log is available from:
   http://people.debian.org/~lucas/logs/2016/08/28/macs_2.1.1.20160309-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.