[Debian-med-packaging] ncbi-tools6_6.1.20160908-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Hash: SHA256

Format: 1.8
Date: Sun, 04 Dec 2016 21:33:55 -0500
Source: ncbi-tools6
Binary: libncbi6 libncbi6-dev ncbi-data ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6b libvibrant6-dev
Architecture: source
Version: 6.1.20160908-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Aaron M. Ucko <ucko at debian.org>
Description:
 blast2     - transitional package to ncbi-blast+-legacy
 libncbi6   - NCBI libraries for biology applications
 libncbi6-dev - NCBI libraries for biology applications (development files)
 libvibrant6-dev - NCBI libraries for graphic biology applications (development file
 libvibrant6b - NCBI libraries for graphic biology applications
 ncbi-data  - Platform-independent data for the NCBI toolkit
 ncbi-rrna-data - large rRNA BLAST databases distributed with the NCBI toolkit
 ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities)
 ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities)
Closes: 821075 846477
Changes:
 ncbi-tools6 (6.1.20160908-1) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * (Final) new upstream release, incorporating most Debian changes, adding
     HTTPS support, and desupporting legacy BLAST.  (Closes: #846477, #821075.)
   * cme fix dpkg-control
   * drop -dbg packages since these will be created automatically
   * Fixed watch file (thanks to Eriberto <eriberto at eriberto.pro.br>)
   * DEP5
 .
   [ Aaron M. Ucko ]
   * Reinstate direct upstream changes lost in merge.
   * Ensure that apps that could potentially hit the network can use HTTPS.
     (Don't bother with anything that only supports the old Entrez1 service.)
   * Allow Entrez2 over HTTPS by switching to the Entrez2s service, making
     HTTPS connections by default, and allowing HTTPS POST redirections from
     raw IP addresses (which NCBI's certificates don't cover).
   * Let GCC take care of setting __DATE__ and __TIME__ per SOURCE_DATE_EPOCH.
   * api/sqnutil3.c: Substitute strcpy for sprintf with no extra
     arguments, which our hardening flags disallow.
   * connect/ncbi_gnutls.c: Suppress strict version check.
   * debian/*.symbols: Update for new release.
   * debian/{blast2.*,control,rules}, make/makedemo.unx: Turn blast2 into an
     architecture-independent transitional package for ncbi-blast+-legacy.
     (Retire blastcl3, which is obsolete.)
   * debian/{compat,control}: Advance to Debhelper compat level 10.
   * debian/control: Drop unversioned B-D-I on dpkg-dev left behind by cme.
   * debian/{control,rules}:
     - Build against GNU TLS.
     - Retune ncbi-data/ncbi-rrna-data split.
   * debian/libncbi6(-dev).install, make/makeshlib.unx: Account for new
     libconnssl library.
   * debian/rules:
     - Drop override_dh_strip-arch target now that -dbg packages are gone.
     - Fix typo in name of override_dh_makeshlibs-arch target from #806084.
   * debian/{rules,.gitignore}: Stop generating legacy menu files for
     non-interactive tools (already retired in favor of XDG desktop files
     for true graphical applications).
   * debian/rules, make/make{demo,net}.unx: Substitute -Wl,--as-needed
     for manual linkage cleanups.
   * demo/tbl2asn.c: Complain about date only if failing for other reasons.
     (Closes: #821075.)
   * doc/man/blastcl3.1: Fix a stray reference to retired programs.
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Files:
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