[Debian-med-packaging] Bug#847171: Help needed for Bug#847171 soapdenovo2: Different output, still FTBFS

[Andreas Tille]

On Thu, Dec 08, 2016 at 02:11:07PM +0500, Andrey Rahmatullin wrote:
> On Thu, Dec 08, 2016 at 09:58:37AM +0100, Andreas Tille wrote:
> > it seems there are different ways how the build fails but its totally
> > unclear to me why this happens.
> The package just built fine in my sbuild chroot for 3 times.

I tried again and had one build success in pbuilder and in the very
same pbuilder environment the next build ended with

...
make[2]: Leaving directory '/build/soapdenovo2-240+dfsg1/standardPregraph'
make[2]: Leaving directory '/build/soapdenovo2-240+dfsg1/standardPregraph'
standardPregraph/kmerhash.o: In function `search_kmerset2':
./kmerhash.c:227: undefined reference to `Kmer2int128'
standardPregraph/kmerhash.o: In function `put_kmerset2':
./kmerhash.c:410: undefined reference to `Kmer2int128'
standardPregraph/kmerhash.o: In function `modular':
./kmerhash.c:56: undefined reference to `Kmer2int128'
standardPregraph/kmerhash.o: In function `encap_kmerset2':
./kmerhash.c:354: undefined reference to `Kmer2int128'
collect2: error: ld returned 1 exit status
Makefile:74: recipe for target 'SOAPdenovo-127mer' failed
make[1]: *** [SOAPdenovo-127mer] Error 1
make[1]: *** Waiting for unfinished jobs....
standardPregraph/kmerhash.o: In function `search_kmerset2':
./kmerhash.c:227: undefined reference to `Kmer2int128'
standardPregraph/kmerhash.o: In function `put_kmerset2':
./kmerhash.c:410: undefined reference to `Kmer2int128'
standardPregraph/kmerhash.o: In function `modular':
./kmerhash.c:56: undefined reference to `Kmer2int128'
standardPregraph/kmerhash.o: In function `encap_kmerset2':
./kmerhash.c:354: undefined reference to `Kmer2int128'
collect2: error: ld returned 1 exit status
Makefile:70: recipe for target 'SOAPdenovo-63mer' failed
make[1]: *** [SOAPdenovo-63mer] Error 1
make[1]: Leaving directory '/build/soapdenovo2-240+dfsg1'
dh_auto_build: make -j4 returned exit code 2
debian/rules:15: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
I: copying local configuration
E: Failed autobuilding of package


I admit I'm totally clueless. :-(

Kind regards

     Andreas.


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