[Debian-med-packaging] Bug#848105: libbio-graphics-perl: FTBFS: Failed 1/2 test programs. 0/15 subtests failed.

[Chris Lamb]

Source: libbio-graphics-perl
Version: 2.39-5
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bugs at lists.alioth.debian.org

Dear Maintainer,

libbio-graphics-perl fails to build from source in unstable/amd64:

  […]

  dh build
     dh_testdir
     dh_update_autotools_config
     dh_auto_configure
  	perl -I. Build.PL --installdirs vendor --config "optimize=-g -O2 -fdebug-prefix-map=«BUILDDIR»=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=x86_64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
  Created MYMETA.yml and MYMETA.json
  Creating new 'Build' script for 'Bio-Graphics' version '2.39'
     dh_auto_build
  	perl Build
  Building Bio-Graphics
     dh_auto_test
  	perl Build test --verbose 1
  
  ------------- EXCEPTION: Bio::Root::Exception -------------
  MSG: The requested glyph class, ``arrow'' is not available: Can't locate Bio/Coordinate/Pair.pm in @INC (you may need to install the Bio::Coordinate::Pair module) (@INC contains: . «BUILDDIR»/t/../lib /home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/blib/lib /home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/blib/arch /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.24.1 /usr/local/share/perl/5.24.1 /usr/lib/x86_64-linux-gnu/perl5/5.24 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at /home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13.
  BEGIN failed--compilation aborted at «BUILDDIR»/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13.
  Compilation failed in require at (eval 43) line 2.
  
  STACK: Error::throw
  STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:447
  STACK: Bio::Graphics::Glyph::Factory::make_glyph «BUILDDIR»/t/../lib/Bio/Graphics/Glyph/Factory.pm:342
  STACK: Bio::Graphics::Glyph::make_subglyph «BUILDDIR»/t/../lib/Bio/Graphics/Glyph.pm:310
  STACK: Bio::Graphics::Glyph::new «BUILDDIR»/t/../lib/Bio/Graphics/Glyph.pm:270
  STACK: Bio::Graphics::Glyph::Factory::make_glyph «BUILDDIR»/t/../lib/Bio/Graphics/Glyph/Factory.pm:346
  STACK: Bio::Graphics::Panel::_add_track «BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:414
  STACK: Bio::Graphics::Panel::_do_add_track «BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:386
  STACK: Bio::Graphics::Panel::add_track «BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:312
  STACK: Bio::Graphics::FeatureFile::render «BUILDDIR»/t/../lib/Bio/Graphics/FeatureFile.pm:675
  STACK: t/BioGraphics.t:53
  -----------------------------------------------------------
  # Looks like you planned 49 tests but ran 4.
  # Looks like your test exited with 2 just after 4.
  t/BioGraphics.t .. 
  1..49
  ok 1 - use GD::Image;
  ok 2 - use Bio::Graphics::FeatureFile;
  ok 3 - use Bio::Graphics::Panel;
  ok 4
  Dubious, test returned 2 (wstat 512, 0x200)
  Failed 45/49 subtests 
  t/Wiggle.t ....... 
  1..11
  ok 1
  ok 2
  ok 3
  ok 4
  ok 5
  ok 6
  ok 7
  ok 8
  ok 9
  ok 10
  ok 11
  ok
  
  Test Summary Report
  -------------------
  t/BioGraphics.t (Wstat: 512 Tests: 4 Failed: 0)
    Non-zero exit status: 2
    Parse errors: Bad plan.  You planned 49 tests but ran 4.
  Files=2, Tests=15,  1 wallclock secs ( 0.03 usr  0.00 sys +  0.50 cusr  0.04 csys =  0.57 CPU)
  Result: FAIL
  Failed 1/2 test programs. 0/15 subtests failed.
  dh_auto_test: perl Build test --verbose 1 returned exit code 255
  debian/rules:4: recipe for target 'build' failed
  make: *** [build] Error 2
  dpkg-buildpackage: error: debian/rules build gave error exit status 2

  […]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
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