[Debian-med-packaging] Bug#848394: metastudent-data: FTBFS: Error: Argument "dbtype". Mandatory value is missing: `String, `nucl', `prot''

[Chris Lamb]

Source: metastudent-data
Version: 2.0.1-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bugs at lists.alioth.debian.org

Dear Maintainer,

metastudent-data fails to build from source in unstable/amd64:

  […]

     dh_auto_build -O--parallel
  dh_auto_build: Compatibility levels before 9 are deprecated (level 8 in use)
  	make -j9
  make[1]: Entering directory '«BUILDDIR»'
  mkdir -p dataset_201401/BPO/ && \
  	formatdb -i "dataset_201401/BPO/goasp.fasta" -n "dataset_201401/BPO/goasp.fasta" && rm -f formatdb.log
  mkdir -p dataset_201401/MFO/ && \
  	formatdb -i "dataset_201401/MFO/goasp.fasta" -n "dataset_201401/MFO/goasp.fasta" && rm -f formatdb.log
  mkdir -p dataset_201401/CCO/ && \
  	formatdb -i "dataset_201401/CCO/goasp.fasta" -n "dataset_201401/CCO/goasp.fasta" && rm -f formatdb.log
  USAGE
    makeblastdb [-h] [-help] [-in input_file] [-input_type type]
      -dbtype molecule_type [-title database_title] [-parse_seqids]
      [-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
      [-mask_desc mask_algo_descriptions] [-gi_mask]
      [-gi_mask_name gi_based_mask_names] [-out database_name]
      [-max_file_sz number_of_bytes] [-logfile File_Name] [-taxid TaxID]
      [-taxid_map TaxIDMapFile] [-version]
  
  DESCRIPTION
     Application to create BLAST databases, version 2.5.0+
  
  Use '-help' to print detailed descriptions of command line arguments
  ========================================================================
  
  Error: Argument "dbtype". Mandatory value is missing:  `String, `nucl', `prot''
  Error:  (CArgException::eNoArg) Argument "dbtype". Mandatory value is missing:  `String, `nucl', `prot''
  Program failed, try executing the command manually.
  Makefile:606: recipe for target 'dataset_201401/MFO/goasp.fasta.psq' failed
  make[1]: *** [dataset_201401/MFO/goasp.fasta.psq] Error 1
  make[1]: *** Waiting for unfinished jobs....
  USAGE
    makeblastdb [-h] [-help] [-in input_file] [-input_type type]
      -dbtype molecule_type [-title database_title] [-parse_seqids]
      [-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
      [-mask_desc mask_algo_descriptions] [-gi_mask]
      [-gi_mask_name gi_based_mask_names] [-out database_name]
      [-max_file_sz number_of_bytes] [-logfile File_Name] [-taxid TaxID]
      [-taxid_map TaxIDMapFile] [-version]
  
  DESCRIPTION
     Application to create BLAST databases, version 2.5.0+
  
  Use '-help' to print detailed descriptions of command line arguments
  ========================================================================
  
  Error: Argument "dbtype". Mandatory value is missing:  `String, `nucl', `prot''
  Error:  (CArgException::eNoArg) Argument "dbtype". Mandatory value is missing:  `String, `nucl', `prot''
  Program failed, try executing the command manually.
  Makefile:606: recipe for target 'dataset_201401/BPO/goasp.fasta.psq' failed
  make[1]: *** [dataset_201401/BPO/goasp.fasta.psq] Error 1
  USAGE
    makeblastdb [-h] [-help] [-in input_file] [-input_type type]
      -dbtype molecule_type [-title database_title] [-parse_seqids]
      [-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
      [-mask_desc mask_algo_descriptions] [-gi_mask]
      [-gi_mask_name gi_based_mask_names] [-out database_name]
      [-max_file_sz number_of_bytes] [-logfile File_Name] [-taxid TaxID]
      [-taxid_map TaxIDMapFile] [-version]
  
  DESCRIPTION
     Application to create BLAST databases, version 2.5.0+
  
  Use '-help' to print detailed descriptions of command line arguments
  ========================================================================
  
  Error: Argument "dbtype". Mandatory value is missing:  `String, `nucl', `prot''
  Error:  (CArgException::eNoArg) Argument "dbtype". Mandatory value is missing:  `String, `nucl', `prot''
  Program failed, try executing the command manually.
  Makefile:606: recipe for target 'dataset_201401/CCO/goasp.fasta.psq' failed
  make[1]: *** [dataset_201401/CCO/goasp.fasta.psq] Error 1
  make[1]: Leaving directory '«BUILDDIR»'
  dh_auto_build: make -j9 returned exit code 2
  debian/rules:8: recipe for target 'build' failed
  make: *** [build] Error 2
  dpkg-buildpackage: error: debian/rules build gave error exit status 2

  […]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
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