[Debian-med-packaging] Bug#847736: src:htsjdk: New upstream version available

[Vincent Danjean]

Le 18/12/2016 à 09:10, Andreas Tille a écrit :
> On Sun, Dec 11, 2016 at 09:55:53AM +0000, olivier sallou wrote:
>> I will gave a look, but looks gradle related (build system),  and i am not
>> familiar with this system.
> 
> Vincent, do you have some clue or should we try to consult Debian Java team?

It seems the root cause is a missing junit jar:

:compileTestJava
	Replacing org.testng:testng:jar:6.9.9  ->  org.testng:testng:jar:6.x
	Passing through org.beanshell:bsh:jar:debian
	Passing through com.beust:jcommander:jar:1.x
Executing task ':compileTestJava' (up-to-date check took 0.136 secs) due to:
  No history is available.
All input files are considered out-of-date for incremental task ':compileTestJava'.
Compiling with JDK Java compiler API.
/home/vdanjean/debian/mainteneur/htsjdk/htsjdk/src/test/java/htsjdk/samtools/util/AbstractLocusInfoTest.java:33: error: package org.junit does not exist
import static org.junit.Assert.assertEquals;
                       ^
/home/vdanjean/debian/mainteneur/htsjdk/htsjdk/src/test/java/htsjdk/samtools/util/AbstractLocusInfoTest.java:33: error: static import only from classes and interfaces
import static org.junit.Assert.assertEquals;
^
/home/vdanjean/debian/mainteneur/htsjdk/htsjdk/src/test/java/htsjdk/samtools/util/AbstractRecordAndOffsetTest.java:30: error: package org.junit does not exist
[...]

junit is installed on my computer not (it seems) not used by
the build system. I will try to patch build.gradle so it uses
it.

  Regards
    Vincent


> 
> Kind regards
> 
>       Andreas.
> 


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