[Debian-med-packaging] Bug#848758: python-skbio: FTBFS: Test failures

[Lucas Nussbaum]

Source: python-skbio
Version: 0.5.1-1
Severity: serious
Tags: stretch sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20161219 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
>     multiple_comparisons_correction=None)
>   File "/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/skbio/stats/composition.py", line 971, in ancom
>     _logratio_mat = _log_compare(mat.values, cats.values, significance_test)
>   File "/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/skbio/stats/composition.py", line 1084, in _log_compare
>     arr=ratio)
>   File "/usr/lib/python3/dist-packages/numpy/lib/shape_base.py", line 133, in apply_along_axis
>     if res.shape == ():
> AttributeError: 'F_onewayResult' object has no attribute 'shape'
> 
> ----------------------------------------------------------------------
> Ran 2238 tests in 42.139s
> 
> FAILED (SKIP=30, errors=15)
> E: pybuild pybuild:276: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose 
> dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.5 returned exit code 13
> debian/rules:22: recipe for target 'override_dh_auto_test' failed

The full build log is available from:
   http://aws-logs.debian.net/2016/12/19/python-skbio_0.5.1-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.