[Debian-med-packaging] Bug#848768: biojava4-live: FTBFS: [javac] /<<BUILDDIR>>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java:27: error: package org.jgrapht does not exist

[olivier sallou]

Le mar. 20 déc. 2016 à 08:38, Andreas Tille <tille at debian.org> a écrit :

> Hi Olivier and Ximin,
>
> I stripped the quote of the build log below but to me it seems to be
> related to the jmol upgrade.
>

I saw the bug this morning, I gonna have a look

>
> Any help to get this fixed would be really welcome.
>
> Kind regards
>
>       Andreas.
>
> On Mon, Dec 19, 2016 at 10:08:48PM +0100, Lucas Nussbaum wrote:
> > Source: biojava4-live
> > Version: 4.2.4+dfsg-1
> > Severity: serious
> > Tags: stretch sid
> > User: debian-qa at lists.debian.org
> > Usertags: qa-ftbfs-20161219 qa-ftbfs
> > Justification: FTBFS on amd64
> >
> > Hi,
> >
> > During a rebuild of all packages in sid, your package failed to build on
> > amd64.
> > ...
> > >     [javac]                 UndirectedGraph<Integer, DefaultEdge>
> graph = new SimpleGraph<Integer, DefaultEdge>(
> > >     [javac]
>                             ^
> > >     [javac]   symbol:   class DefaultEdge
> > >     [javac]   location: class SymmetryTools
> > >     [javac]
> /<<BUILDDIR>>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java:481:
> error: cannot find symbol
> > >     [javac]                                 DefaultEdge.class);
> > >     [javac]                                 ^
> > >     [javac]   symbol:   class DefaultEdge
> > >     [javac]   location: class SymmetryTools
> > >     [javac] Note: Some input files use or override a deprecated API.
> > >     [javac] Note: Recompile with -Xlint:deprecation for details.
> > >     [javac] Note:
> /<<BUILDDIR>>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/MetalBondConsumer.java
> uses unchecked or unsafe operations.
> > >     [javac] Note: Recompile with -Xlint:unchecked for details.
> > >     [javac] 67 errors
> > >
> > > BUILD FAILED
>
> --
> http://fam-tille.de
>
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