[Debian-med-packaging] Bug#848768: biojava4-live: FTBFS: [javac] /<<BUILDDIR>>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java:27: error: package org.jgrapht does not exist

[olivier sallou]

I have already fixed the issue.
The problem was a library previously in suggest for runtime is now needed
for build.

Le mar. 20 déc. 2016 à 12:43, Ximin Luo <infinity0 at debian.org> a écrit :

> Hey all,
>
> Indeed, jmol in unstable is still version 12. If biojava4-live 4.2.4 is
> supposed to work with 14, that would be the problem.
>
> I will upload jmol 14 to unstable in the next 2-3 hours, you can try it
> again with that. Perhaps it would already solve this FTBFS.
>
> X
>
> olivier sallou:
> > Le mar. 20 déc. 2016 à 08:55, olivier sallou <olivier.sallou at gmail.com>
> a
> > écrit :
> >
> >> Le mar. 20 déc. 2016 à 08:38, Andreas Tille <tille at debian.org> a écrit
> :
> >>
> >> Hi Olivier and Ximin,
> >>
> >> I stripped the quote of the build log below but to me it seems to be
> >> related to the jmol upgrade.
> >>
> >>
> > jmol is still in 12.2.32, looks like to be an other pb, I am
> investigating
> >
> >
> >>
> >> I saw the bug this morning, I gonna have a look
> >>
> >>
> >> Any help to get this fixed would be really welcome.
> >>
> >> Kind regards
> >>
> >>       Andreas.
> >>
> >> On Mon, Dec 19, 2016 at 10:08:48PM +0100, Lucas Nussbaum wrote:
> >>> Source: biojava4-live
> >>> Version: 4.2.4+dfsg-1
> >>> Severity: serious
> >>> Tags: stretch sid
> >>> User: debian-qa at lists.debian.org
> >>> Usertags: qa-ftbfs-20161219 qa-ftbfs
> >>> Justification: FTBFS on amd64
> >>>
> >>> Hi,
> >>>
> >>> During a rebuild of all packages in sid, your package failed to build
> on
> >>> amd64.
> >>> ...
> >>>>     [javac]                 UndirectedGraph<Integer, DefaultEdge>
> >> graph = new SimpleGraph<Integer, DefaultEdge>(
> >>>>     [javac]
> >>                             ^
> >>>>     [javac]   symbol:   class DefaultEdge
> >>>>     [javac]   location: class SymmetryTools
> >>>>     [javac]
> >>
> /<<BUILDDIR>>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java:481:
> >> error: cannot find symbol
> >>>>     [javac]                                 DefaultEdge.class);
> >>>>     [javac]                                 ^
> >>>>     [javac]   symbol:   class DefaultEdge
> >>>>     [javac]   location: class SymmetryTools
> >>>>     [javac] Note: Some input files use or override a deprecated API.
> >>>>     [javac] Note: Recompile with -Xlint:deprecation for details.
> >>>>     [javac] Note:
> >>
> /<<BUILDDIR>>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/MetalBondConsumer.java
> >> uses unchecked or unsafe operations.
> >>>>     [javac] Note: Recompile with -Xlint:unchecked for details.
> >>>>     [javac] 67 errors
> >>>>
> >>>> BUILD FAILED
> >>
> >> --
> >> http://fam-tille.de
> >>
> >>
> >
>
>
> --
> GPG: ed25519/56034877E1F87C35
> GPG: rsa4096/1318EFAC5FBBDBCE
> https://github.com/infinity0/pubkeys.git
>
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