[Debian-med-packaging] Bug#848758: Bug#848758: python-skbio: FTBFS: Test failures

[Kevin Murray]

Hi all,

On 22:19 19/12, Lucas Nussbaum wrote:
> Source: python-skbio
> Version: 0.5.1-1
> Severity: serious
> Tags: stretch sid
> User: debian-qa at lists.debian.org
> Usertags: qa-ftbfs-20161219 qa-ftbfs
> Justification: FTBFS on amd64
> 
> Hi,
> 
> During a rebuild of all packages in sid, your package failed to build on
> amd64.
> 
> Relevant part (hopefully):
> >     multiple_comparisons_correction=None)
> >   File "/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/skbio/stats/composition.py", line 971, in ancom
> >     _logratio_mat = _log_compare(mat.values, cats.values, significance_test)
> >   File "/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/skbio/stats/composition.py", line 1084, in _log_compare
> >     arr=ratio)
> >   File "/usr/lib/python3/dist-packages/numpy/lib/shape_base.py", line 133, in apply_along_axis
> >     if res.shape == ():
> > AttributeError: 'F_onewayResult' object has no attribute 'shape'
> > 
> > ----------------------------------------------------------------------
> > Ran 2238 tests in 42.139s
> > 
> > FAILED (SKIP=30, errors=15)
> > E: pybuild pybuild:276: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose 
> > dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.5 returned exit code 13
> > debian/rules:22: recipe for target 'override_dh_auto_test' failed

Upstream has now fixed this issue, and I've cherry-picked the fix into the
package as a patch. I've pushed to git.d.o, so an (urgent) upload would be much
appreciated.

Merry Christmas all!

Cheers
K

---
Kevin Murray