[Debian-med-packaging] Bug#813958: trinityrnaseq: FTBFS: cannot access .../trinityrnaseq-examples/...

[Aaron M. Ucko]

Source: trinityrnaseq
Version: 2.1.1+dfsg-1
Severity: serious
Justification: fails to build from source

Builds of trinityrnaseq covering only its main architecture-dependent package
(notably, on the autobuilders, or with dpkg-buildpackage -B) failed:

  chmod u+x \
          debian/trinityrnaseq/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/class_to_separate_fpkm_matrices.pl \
          debian/trinityrnaseq/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/count_by_expression_quintile.pl \
          debian/trinityrnaseq/usr/lib/trinityrnaseq/util/misc/capture_orig_n_unmapped_reads.pl \
          debian/trinityrnaseq/usr/lib/trinityrnaseq/util/support_scripts/plugin_install_tests.sh \
          debian/trinityrnaseq/usr/lib/trinityrnaseq/util/support_scripts/trinity_install_tests.sh \
          debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/__regression_tests/test_GraphFromFasta/runMe.sh \
          debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Inchworm/runMe_MPI.sh \
          debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.clean.sh \
          debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.sh
  chmod: cannot access 'debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/__regression_tests/test_GraphFromFasta/runMe.sh': No such file or directory
  chmod: cannot access 'debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Inchworm/runMe_MPI.sh': No such file or directory
  chmod: cannot access 'debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.clean.sh': No such file or directory
  chmod: cannot access 'debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.sh': No such file or directory
  debian/rules:42: recipe for target 'override_dh_install' failed

Please conditionalize the different portions of this command appropriately.

Thanks!