[Debian-med-packaging] Bug#815176: staden: Gap4 contig editor does not show sequences

[Kerstin Hoef-Emden]

Hi to all,

On Mon, 22 Feb 2016, Andreas Tille wrote:

> Hmmm, lets hunt down this as well.  Could you please write the output of
>
>    apt-get policy staden

You probably mean apt-cache policy staden?

khe at euler:~$ apt-cache policy staden
staden:
   Installiert:           2.0.0+b10-1.1
   Installationskandidat: 2.0.0+b10-1.1
   Versionstabelle:
  *** 2.0.0+b10-1.1 0
         500 http://ftp.de.debian.org/debian/ jessie/main amd64 Packages
         100 /var/lib/dpkg/status

Actually I tried update and upgrade first, which did not include staden, 
then I deinstalled staden and reinstalled it.

>    cat `which pregap4`

Do you really want to see the whole script?

> Perhaps you try
>
>    cp `which pregap4` ~/pregap4
>
> edit ~/pregap4 and add
>
>    set -x

Did not work.

> as the second line in this script.  For me this looks pretty sensible.
>
> Alternatively you could try explicitly calling
>
>    /usr/lib/staden/bin/pregap4
>
> What happens if you do this?

Did not work (I am surprised - this is the path containing all modules).

Best wishes,

Kerstin

-- 

PD Dr. Kerstin Hoef-Emden			Zülpicher Str. 47b
Universität zu Köln				50674 Köln
Biozentrum Köln (Cologne Biocenter)		Germany
Botanisches Institut

http://www.uni-koeln.de/~aeb25/