[Debian-med-packaging] Bug#810842: [anbe at debian.org: Bug#810842: igv: libsam-java is gone]

[olivier sallou]

Le jeu. 14 janv. 2016 à 12:14, Andreas Tille <tille at debian.org> a écrit :

> On Thu, Jan 14, 2016 at 09:42:01AM +0000, olivier sallou wrote:
> > Le mar. 12 janv. 2016 à 22:23, Andreas Tille <tille at debian.org> a écrit
> :
> >
> > > Hi,
> > >
> > > is it libhtsjdk-java which provides the relevant classes now or what
> > > needs to be changed?  (Same for fastqc.)
> > >
> > replacing lib/htsjdk-xx by libhtsjdk-java and adding htsjdk.jar file in
> >  build.xml makes compilation fine
>
> Cool.  Thanks for checking.  Would you do the upload yourself (preferably
> by also upgrading to the latest version)?  If you have time constraints
> feel free to commit your test to Git and I'll take over.
>
I have no time right now, but I can do it quite soon if it is fine for you.
I have not pulled code, so I cannot push it, I simply added htsjdk.jar in
build.xml and remove hstjdklib from lib/ dir. But I can do this soon before
uploading.

>
> Did you also tested fastqc?
>
nope

>
> Kind regards
>
>         Andreas.
>
> --
> http://fam-tille.de
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.alioth.debian.org/pipermail/debian-med-packaging/attachments/20160114/395e4473/attachment.html>