[Debian-med-packaging] Bug#811002: Please help tracking down this issue in test suite [Was: Bug#811002: python-ruffus: FTBFS: sre_constants.error: unbalanced parenthesis at position 2]

Thu Jan 14 20:48:21 UTC 2016

Hi,

I'm forwarding this issue of the test suite to upstream and Debian
Python mailing list since I admit I have no idea what might be wrong
here.

Any help is welcome

     Andreas.

----- Forwarded message from Chris Lamb <lamby at debian.org> -----

Date: Thu, 14 Jan 2016 18:04:32 +0000
From: Chris Lamb <lamby at debian.org>
To: submit at bugs.debian.org
Subject: Bug#811002: python-ruffus: FTBFS: sre_constants.error: unbalanced parenthesis at position 2
X-Debian-PR-Message: report 811002
X-Debian-PR-Package: src:python-ruffus
X-Debian-PR-Keywords: 
X-Debian-PR-Source: python-ruffus

Source: python-ruffus
Version: 2.6.3+dfsg-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

python-ruffus fails to build from source in unstable/amd64:

  [..]

  Running test_mkdir.py
  .    Loose cannon!
  .    Loose cannon!
  .
  ----------------------------------------------------------------------
  Ran 3 tests in 2.782s

  OK
  Running test_posttask_merge.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 9.936s

  OK
  Running test_cmdline.py
  ....
  ----------------------------------------------------------------------
  Ran 4 tests in 0.007s

  OK
  Running test_graphviz.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 0.003s

  OK
  Running test_ruffus_utility_parse_task_arguments.py
  .....
  ----------------------------------------------------------------------
  Ran 5 tests in 0.003s

  OK
  Running test_split_subdivide_checkpointing.py
       Run pipeline normally...
       Check that running again does nothing. (All up to date).
       Running again with forced tasks to generate more files...
       Check that running again does nothing. (All up to date).
       Running again with forced tasks to generate even more files...
       Check that running again does nothing. (All up to date).
  .     Run pipeline normally...
       Check that running again does nothing. (All up to date).
       Running again with forced tasks to generate more files...
       Check that running again does nothing. (All up to date).
       Running again with forced tasks to generate even more files...
       Check that running again does nothing. (All up to date).
  .
  ----------------------------------------------------------------------
  Ran 2 tests in 4.496s

  OK
  Running test_pipeline_printout_graph.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 0.010s

  OK
       Run pipeline normally...
       Run pipeline normally...
  Running test_follows_mkdir.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 1.570s

  OK
  Running test_N_x_M_and_collate.py
  .
  OK
  .
  ----------------------------------------------------------------------
  Ran 2 tests in 2.158s

  OK

  OK
  Running test_unicode_filenames.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 1.677s

  OK
  Running test_subpipeline.py
  .
  ----------------------------------------------------------------------
  Ran 1 test in 2.942s

  OK
  Running test_regex_error_messages.py
  ............
  ----------------------------------------------------------------------
  Ran 12 tests in 4.090s

  OK
  Running test_newstyle_regex_error_messages.py
  ............
  ----------------------------------------------------------------------
  Ran 12 tests in 3.990s

  OK
  Running test_combinatorics.py
  .................
  ----------------------------------------------------------------------
  Ran 17 tests in 8.407s

  OK
  Running test_newstyle_combinatorics.py
  .................
  ----------------------------------------------------------------------
  Ran 17 tests in 8.737s

  OK
  Running test_job_completion_checksums.py
  ..................
  ----------------------------------------------------------------------
  Ran 18 tests in 6.896s

  OK
  Running test_transform_formatter.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 0.384s

  OK
  DONE!!!
  Running test_file_name_parameters.py
  ........................
  ----------------------------------------------------------------------
  Ran 24 tests in 2.247s

  OK
  Running test_with_logger.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 6.924s

  OK
  Running script test_with_logger.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 6.896s

  OK
  Running test_proxy_logger.py
  .
  ----------------------------------------------------------------------
  Ran 1 test in 0.011s

  OK
  Running test_exceptions.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 0.794s

  OK
  Running test_task_file_dependencies.py
  .
  ----------------------------------------------------------------------
  Ran 1 test in 0.135s

  OK
  Running test_task_misc.py
  .
  ----------------------------------------------------------------------
  Ran 1 test in 0.001s

  OK
  Running test_inputs_with_multiple_args_raising_exception.py
  .	Expected exception thrown 2
  	Expected exception thrown 2
  .
  ----------------------------------------------------------------------
  Ran 2 tests in 0.016s

  OK
  Running test_collate.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 1.370s

  OK
  Running test_empty_files_decorator.py

      Warning printed out correctly
  .
      Warning printed out correctly
  .
  ----------------------------------------------------------------------
  Ran 2 tests in 0.257s

  OK
  Running test_transform_with_no_re_matches.py
      Ruffus Version =  2.6.3

      Warning printed out correctly
  .    In Task 'test::test_transform_with_no_re_matches.task_2':
          No jobs were run because no file names matched.
          Please make sure that the regular expression is correctly specified. 

      Warning printed out correctly
  .
  ----------------------------------------------------------------------
  Ran 2 tests in 0.864s

  OK
      In Task 'test_transform_with_no_re_matches.task_2':
          No jobs were run because no file names matched.
          Please make sure that the regular expression is correctly specified. 
  Running test_transform_inputs.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 2.081s

  OK
  Running test_files_decorator.py
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 1.875s

  OK
  Running test_verbosity.py
  ......
  ----------------------------------------------------------------------
  Ran 6 tests in 0.090s

  OK
  Running test_transform_add_inputs.py
  	Ruffus Version =  2.6.3
  ..
  ----------------------------------------------------------------------
  Ran 2 tests in 1.969s

  OK
  Running test_split_regex_and_collate.py
  	Split into 5 files each
  	Sequences aligned
  	%Identity calculated
  	Results recombined
  .	Split into 5 files each
  	Sequences aligned
  	%Identity calculated
  	Results recombined
  .
  ----------------------------------------------------------------------
  Ran 2 tests in 4.194s

  OK
  Running test_tutorial7.py
  .
  ----------------------------------------------------------------------
  Ran 1 test in 1.180s

  OK
       hooray
       hooray again
       whoppee again
  Running test_ruffus_utility.py
  ...F..............
  ======================================================================
  FAIL: test_compile_regex (test_ruffus_utility.Test_compile_regex)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/home/lamby/temp/cdt.20160114185942.aDc70PbmhT/python-ruffus-2.6.3+dfsg/ruffus/ruffus_utility.py", line 1284, in compile_regex
      matching_regex = re.compile(regex.args[0])
  sre_constants.error: unbalanced parenthesis at position 2

  During handling of the above exception, another exception occurred:

  Traceback (most recent call last):
    File "/home/lamby/temp/cdt.20160114185942.aDc70PbmhT/python-ruffus-2.6.3+dfsg/ruffus/test/test_ruffus_utility.py", line 260, in test_compile_regex
      compile_regex("Dummy Task", regex(".*)"), Exception, "test1")
  Exception: ('Dummy Task', "test1: regular expression regex('.*)') is malformed\n[sre_constants.error: (unbalanced parenthesis at position 2)]")

  During handling of the above exception, another exception occurred:

  Traceback (most recent call last):
    File "/home/lamby/temp/cdt.20160114185942.aDc70PbmhT/python-ruffus-2.6.3+dfsg/ruffus/test/test_ruffus_utility.py", line 262, in test_compile_regex
      self.assertEqual(e.args, ('Dummy Task', "test1: regular expression regex('.*)') is malformed\n[sre_constants.error: (unbalanced parenthesis)]"))
  AssertionError: Tuples differ: ('Dum[64 chars][sre_constants.error: (unbalanced parenthesis at position 2)]") != ('Dum[64 chars][sre_constants.error: (unbalanced parenthesis)]")

  First differing element 1:
  test1: regular expression regex('.*)') is malformed
  [sre_constants.error: (unbalanced parenthesis at position 2)]
  test1: regular expression regex('.*)') is malformed
  [sre_constants.error: (unbalanced parenthesis)]

    ('Dummy Task',
     "test1: regular expression regex('.*)') is malformed\n"
  -  '[sre_constants.error: (unbalanced parenthesis at position 2)]')
  ?                                                --------------

  +  '[sre_constants.error: (unbalanced parenthesis)]')

  ----------------------------------------------------------------------
  Ran 18 tests in 0.008s

  FAILED (failures=1)
  debian/rules:28: recipe for target 'override_dh_auto_test' failed
  make[1]: *** [override_dh_auto_test] Error 1
  make[1]: Leaving directory '/home/lamby/temp/cdt.20160114185942.aDc70PbmhT/python-ruffus-2.6.3+dfsg'
  debian/rules:13: recipe for target 'build' failed
  make: *** [build] Error 2

  [..]

The full build log is attached.

Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-

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