[Debian-med-packaging] Please help fixing test suite of microbiomeutil

[Axel Beckert]

Hi Andreas

Andreas Tille wrote:
> Hi,
> 
> when I touched the microbiomeutil package I noticed that build time
> tests were switched of via
> 
> #Kill the tests just now - they take too long.
> override_dh_auto_test :
>         true
> 
> I do not consider this a good reason and switched these on at least
> for powerful architectures.  The bad news is that the test fails but
> this is probably easy to solve for a Perl programmer:
> 
> ...
> converting NAST mfasta to multi-alignment output highlighting differences
> ../show_malign_no_gap.pl --IGNOREGAPS tmp.both.NAST > tmp.both.NAST.malign
>
> 
> Run via the megablast wrapper
> Can't locate Fasta_reader.pm in @INC (you may need to install the Fasta_reader module) (@INC contains: /usr/lib/NAST-iEr/PerlLib /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at ../run_NAST-iEr.pl line 12.
> BEGIN failed--compilation aborted at ../run_NAST-iEr.pl line 12.
> Makefile:4: recipe for target 'test' failed
> ...
> 
> 
> Fasta_reader.pm is part of the source tarball but for some reason it
> will not be found.  I'd be interested in "the right way to solve this".

Call ../show_malign_no_gap.pl as "perl -I<...>/WigeoN/PerlLib" with
<...> being replace by the appropriate amount of "../" so that the
relative path points to
http://anonscm.debian.org/git/debian-med/microbiomeutil.git/tree/WigeoN/PerlLib

> For your comfort I have converted the packaging from SVN to Git (which
> has ACLs set to grant any DD commit permissions):
> 
>    git://anonscm.debian.org/debian-med/microbiomeutil.git

I can have a closer look earliest Thursday evening. So if the above
already helps, I'd be glad.

		Regards, Axel
-- 
 ,''`.  |  Axel Beckert <abe at debian.org>, http://people.debian.org/~abe/
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