[Debian-med-packaging] Bug#811827: prank: FTBFS with GCC 6: no match for
Andreas Tille
andreas at an3as.eu
Sun Jan 24 11:38:09 UTC 2016
Hi Ari,
to make sure your question will not remain unanswered: I have no idea
about Ubuntu but if I were you I would try to simply install the
packages you found on your currently used system. Alternatively you
could try to create a chroot environment.
Hope this helps
Andreas.
On Wed, Jan 20, 2016 at 03:10:09PM +0200, Ari Löytynoja wrote:
> Hi,
>
> I'm using gcc 5.2.1 on Ubuntu 15.10. Is it possible to check the compatibility
> with this version of gcc? If not, is there gcc-6 available for Wily? I only
> found a repository with gcc-6 for the next Ubuntu release:
> https://launchpad.net/~ubuntu-toolchain-r/+archive/ubuntu/test/
>
> Regards, Ari
>
> On Wednesday 20 January 2016 11:42:00 Andreas Tille wrote:
> > Hi Ari,
> >
> > yes, that source tarball from
> > http://wasabiapp.org/download/prank/prank.source.150803.tgz
> > is used for the packaging.
> >
> > Thanks a lot for your quick reply
> >
> > Andreas.
> >
> > On Wed, Jan 20, 2016 at 12:32:01PM +0200, Ari Löytynoja wrote:
> > > Hi,
> > > Which version of PRANK is that? The latest one is here
> > > http://wasabiapp.org/download/prank/prank.source.150803.tgz
> > >
> > > Regards, Ari
> > >
> > > On Wednesday 20 January 2016 11:04:46 Andreas Tille wrote:
> > > > Hi,
> > > >
> > > > the Debian package for prank failed to build when using gcc version 6 as
> > > > you can read below in the bug report. Feel free to contact us via the
> > > > bug e-mail address (see To of this mail).
> > > >
> > > > Kind regards
> > > >
> > > > Andreas.
> > > >
> > > > On Tue, Jan 19, 2016 at 06:22:00PM -0800, Martin Michlmayr wrote:
> > > > > Package: prank
> > > > > Version: 0.0.150803-1
> > > > > Severity: important
> > > > > User: debian-gcc at lists.debian.org
> > > > > Usertags: ftbfs-gcc-6 gcc-6-no-match
> > > > >
> > > > > This package fails to build with GCC 6. GCC 6 has not been released
> > > > > yet, but it's expected that GCC 6 will become the default compiler for
> > > > > stretch.
> > > > >
> > > > > Note that only the first error is reported; there might be more. You
> > > > > can find a snapshot of GCC 6 in experimental. To build with GCC 6,
> > > > > you can set CC=gcc-6 CXX=g++-6 explicitly.
> > > > >
> > > > > You may be able to find out more about this issue at
> > > > > https://gcc.gnu.org/gcc-6/changes.html
> > > > >
> > > > > > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux
> > > > >
> > > > > ...
> > > > >
> > > > > > g++ -c -g -O2 -fstack-protector-strong -Wformat
> > > > > > -Werror=format-security
> > > > > > -pipe -O3 -I. -I/usr/include -o bppancestors.o bppancestors.cpp
> > > > > > hmmodel.cpp: In member function 'void
> > > > > > HMModel::alignmentModel(AncestralNode*)': hmmodel.cpp:1513:57:
> > > > > > error:
> > > > > > no match for 'operator<<' (operand types are
> > > > > > 'std::basic_ostream<char>'
> > > > > > and 'std::ostream {aka std::basic_ostream<char>}')> >
> > > > > >
> > > > > > cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
> > > > > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
> > > > > >
> > > > > > hmmodel.cpp:1513:57: note: candidate: operator<<(int, int)
> > > > > > <built-in>
> > > > > > hmmodel.cpp:1513:57: note: no known conversion for argument 2 from
> > > > > > 'std::ostream {aka std::basic_ostream<char>}' to 'int' In file
> > > > > > included
> > > > > > from /usr/include/c++/6/istream:39:0,
> > > > > >
> > > > > > from /usr/include/c++/6/fstream:38,
> > > > > >
> > > > > > from hmmodel.cpp:24:
> > > > > > /usr/include/c++/6/ostream:108:7: note: candidate:
> > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type&
> > > > > > std::basic_ostream<_CharT,
> > > > > > _Traits>::operator<<(std::basic_ostream<_CharT,
> > > > > > _Traits>::__ostream_type& (*)(std::basic_ostream<_CharT,
> > > > > > _Traits>::__ostream_type&)) [with _CharT = char; _Traits =
> > > > > > std::char_traits<char>; std::basic_ostream<_CharT,
> > > > > > _Traits>::__ostream_type = std::basic_ostream<char>]> >
> > > > > >
> > > > > > operator<<(__ostream_type& (*__pf)(__ostream_type&))
> > > > > > ^~~~~~~~
> > > > > >
> > > > > > /usr/include/c++/6/ostream:108:7: note: no known conversion for
> > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to
> > > > > > 'std::basic_ostream<char>::__ostream_type&
> > > > > > (*)(std::basic_ostream<char>::__ostream_type&) {aka
> > > > > > std::basic_ostream<char>& (*)(std::basic_ostream<char>&)}'
> > > > > > /usr/include/c++/6/ostream:117:7: note: candidate:
> > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type&
> > > > > > std::basic_ostream<_CharT,
> > > > > > _Traits>::operator<<(std::basic_ostream<_CharT,
> > > > > > _Traits>::__ios_type&
> > > > > > (*)(std::basic_ostream<_CharT, _Traits>::__ios_type&)) [with _CharT
> > > > > > =
> > > > > > char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT,
> > > > > > _Traits>::__ostream_type = std::basic_ostream<char>;
> > > > > > std::basic_ostream<_CharT, _Traits>::__ios_type =
> > > > > > std::basic_ios<char>]>
> > > > > >
> > > > > > operator<<(__ios_type& (*__pf)(__ios_type&))
> > > > > > ^~~~~~~~
> > > > > >
> > > > > > /usr/include/c++/6/ostream:117:7: note: no known conversion for
> > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to
> > > > > > 'std::basic_ostream<char>::__ios_type&
> > > > > > (*)(std::basic_ostream<char>::__ios_type&) {aka
> > > > > > std::basic_ios<char>&
> > > > > > (*)(std::basic_ios<char>&)}' /usr/include/c++/6/ostream:127:7: note:
> > > > > > candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type&
> > > > > > std::basic_ostream<_CharT, _Traits>::operator<<(std::ios_base&
> > > > > > (*)(std::ios_base&)) [with _CharT = char; _Traits =
> > > > > > std::char_traits<char>; std::basic_ostream<_CharT,
> > > > > > _Traits>::__ostream_type = std::basic_ostream<char>]> >
> > > > > >
> > > > > > operator<<(ios_base& (*__pf) (ios_base&))
> > > > > > ^~~~~~~~
> > > > > >
> > > > > > /usr/include/c++/6/ostream:127:7: note: no known conversion for
> > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to
> > > > > > 'std::ios_base& (*)(std::ios_base&)'
> > > > > > /usr/include/c++/6/ostream:166:7:
> > > > > > note: candidate: std::basic_ostream<_CharT,
> > > > > > _Traits>::__ostream_type&
> > > > > > std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with
> > > > > > _CharT
> > > > > > = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT,
> > > > > > _Traits>::__ostream_type = std::basic_ostream<char>]> >
> > > > > >
> > > > > > operator<<(long __n)
> > > > > > ^~~~~~~~
> > > > > >
> > > > > > /usr/include/c++/6/ostream:166:7: note: no known conversion for
> > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to
> > > > > > 'long
> > > > > > int' /usr/include/c++/6/ostream:170:7: note: candidate:
> > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type&
> > > > > > std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int)
> > > > > > [with _CharT = char; _Traits = std::char_traits<char>;
> > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type =
> > > > > > std::basic_ostream<char>]> >
> > > > > >
> > > > > > operator<<(unsigned long __n)
> > > > > > ^~~~~~~~
> > > > > >
> > > > > > /usr/include/c++/6/ostream:170:7: note: no known conversion for
> > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to
> > > > > > 'long
> > > > > > unsigned int' /usr/include/c++/6/ostream:174:7: note: candidate:
> > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type&
> > > > > > std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT =
> > > > > > char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT,
> > > > > > _Traits>::__ostream_type = std::basic_ostream<char>]> >
> > > > > >
> > > > > > operator<<(bool __n)
> > > > > > ^~~~~~~~
> > > > > >
> > > > > > /usr/include/c++/6/ostream:174:7: note: no known conversion for
> > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to
> > > > > > 'bool'
> > > > > > In file included from /usr/include/c++/6/ostream:638:0,
> > > > > >
> > > > > > from /usr/include/c++/6/istream:39,
> > > > > > from /usr/include/c++/6/fstream:38,
> > > > >
> > > > > > from hmmodel.cpp:24:
> > > > > _______________________________________________
> > > > > Debian-med-packaging mailing list
> > > > > Debian-med-packaging at lists.alioth.debian.org
> > > > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-pac
> > > > > kagi
> > > > > ng
>
> --
> Ari Löytynoja
> Institute of Biotechnology
> University of Helsinki, Finland
> http://loytynojalab.biocenter.helsinki.fi
>
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
>
--
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