[Debian-med-packaging] Bug#813250: prime-phylo: FTBFS on hppa: undefined boost references

[John David Anglin]

Source: prime-phylo
Version: 1.0.11-2
Severity: normal

Dear Maintainer,

Build fails here:

/usr/bin/c++   -g -O2 -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wreorder -Wall -fexceptions -g   CMakeFiles/primeGEM.dir/troyo.cc.o CMakeFiles/primeGEM.dir/cmdline.c.o  -o primeGEM -rdynamic ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -lboost_mpi -lboost_serialization ../../libraries/sfile/libprime-phylo-sfile.so -Wl,-rpath,/<<PKGBUILDDIR>>/obj-hppa-linux-gnu/src/cxx/libraries/prime:/usr/lib/openmpi/lib:/<<PKGBUILDDIR>>/obj-hppa-linux-gnu/src/cxx/libraries/sfile: 
../../libraries/prime/libprime-phylo.so: undefined reference to `boost::mpi::communicator::operator ompi_communicator_t*() const'
../../libraries/prime/libprime-phylo.so: undefined reference to `boost::mpi::detail::mpi_datatype_map::set(std::type_info const*, ompi_datatype_t*)'
collect2: error: ld returned 1 exit status
src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build.make:139: recipe for target 'src/cxx/applications/primeGEM/primeGEM' failed

Full log is here:
https://buildd.debian.org/status/fetch.php?pkg=prime-phylo&arch=hppa&ver=1.0.11-2&stamp=1454189436

Regards,
Dave Anglin

-- System Information:
Debian Release: stretch/sid
  APT prefers unreleased
  APT policy: (500, 'unreleased'), (500, 'unstable')
Architecture: hppa (parisc64)

Kernel: Linux 3.18.25+ (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) (ignored: LC_ALL set to en_CA.utf8)
Shell: /bin/sh linked to /bin/dash
Init: sysvinit (via /sbin/init)