[Debian-med-packaging] Bug#830358: pbgenomicconsensus: FTBFS: Tests failures

[Lucas Nussbaum]

Source: pbgenomicconsensus
Version: 2.0.0+20151210-1
Severity: serious
Tags: stretch sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20160707 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
>     self.assertEquals(rcode, 0, "Emitting tool contract failed for '{e}'".format(e=emit_tc_exe))
> AssertionError: Emitting tool contract failed for 'gffToVcf --emit-tool-contract  > /tmp/tmpJ3Vk64rtc-test/tmpwprChk-TestGffToVcf-tool_contract.json'
> -------------------- >> begin captured logging << --------------------
> pbcommand.testkit.core: DEBUG: Driver gffToVcf --emit-tool-contract 
> pbcommand.testkit.core: DEBUG: input files ['/«BUILDDIR»/pbgenomicconsensus-2.0.0+20151210/tests/data/converters/variants.gff.gz']
> pbcommand.testkit.core: DEBUG: running in /tmp/tmpJ3Vk64rtc-test
> --------------------- >> end captured logging << ---------------------
> 
> ----------------------------------------------------------------------
> XML: /«BUILDDIR»/pbgenomicconsensus-2.0.0+20151210/nosetests.xml
> ----------------------------------------------------------------------
> Ran 36 tests in 0.595s
> 
> FAILED (SKIP=2, failures=2)
> make[2]: *** [tests] Error 1
> Makefile:15: recipe for target 'tests' failed

The full build log is available from:
   http://people.debian.org/~lucas/logs/2016/07/07/pbgenomicconsensus_2.0.0+20151210-1_unstable_reb.normal.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.