[Debian-med-packaging] Bug#831239: python-biom-format: FTBFS: /bin/sh: 1: sphinx-build: not found

Thu Jul 14 10:37:45 UTC 2016

Source: python-biom-format
Version: 2.1.5+dfsg-2
Severity: serious
Tags: stretch sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20160714 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> make[1]: Entering directory '/«BUILDDIR»/python-biom-format-2.1.5+dfsg'
> # arch
> USE_CYTHON=true dh_auto_build
> 	pybuild --build --test-nose -i python{version} -p 2.7
> I: pybuild base:184: /usr/bin/python setup.py build 
> Compiling biom/_filter.pyx because it changed.
> Compiling biom/_transform.pyx because it changed.
> Compiling biom/_subsample.pyx because it changed.
> [1/3] Cythonizing biom/_filter.pyx
> [2/3] Cythonizing biom/_subsample.pyx
> [3/3] Cythonizing biom/_transform.pyx
> running build
> running build_py
> creating /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/err.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/exception.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/util.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/parse.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> creating /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
> copying tests/test_table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
> copying tests/test_err.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
> copying tests/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
> copying tests/test_parse.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
> copying tests/test_util.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
> creating /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/table_head.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/uc_processor.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/installation_informer.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/table_normalizer.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/table_converter.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/util.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/table_subsetter.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/metadata_adder.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/table_validator.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> copying biom/cli/table_summarizer.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
> creating /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> copying tests/test_cli/test_validate_table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> copying tests/test_cli/test_table_normalizer.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> copying tests/test_cli/test_show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> copying tests/test_cli/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> copying tests/test_cli/test_summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> copying tests/test_cli/test_uc_processor.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> copying tests/test_cli/test_table_converter.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> copying tests/test_cli/test_add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> copying tests/test_cli/test_subset_table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
> running egg_info
> creating biom_format.egg-info
> writing requirements to biom_format.egg-info/requires.txt
> writing biom_format.egg-info/PKG-INFO
> writing top-level names to biom_format.egg-info/top_level.txt
> writing dependency_links to biom_format.egg-info/dependency_links.txt
> writing entry points to biom_format.egg-info/entry_points.txt
> writing manifest file 'biom_format.egg-info/SOURCES.txt'
> reading manifest file 'biom_format.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> no previously-included directories found matching 'docs/_build'
> warning: no previously-included files matching '*.pyc' found anywhere in distribution
> warning: no previously-included files matching '*.pyo' found anywhere in distribution
> warning: no previously-included files matching '.git' found anywhere in distribution
> writing manifest file 'biom_format.egg-info/SOURCES.txt'
> copying biom/_filter.c -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/_filter.pyx -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/_subsample.c -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/_subsample.pyx -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/_transform.c -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> copying biom/_transform.pyx -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
> running build_ext
> building 'biom._filter' extension
> creating build
> creating build/temp.linux-x86_64-2.7
> creating build/temp.linux-x86_64-2.7/biom
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_filter.c -o build/temp.linux-x86_64-2.7/biom/_filter.o
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_filter.c:250:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it by " \
>   ^
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:27:0,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_filter.c:250:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1448:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
>  _import_array(void)
>  ^
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/biom/_filter.o -o /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_filter.so
> building 'biom._transform' extension
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_transform.c -o build/temp.linux-x86_64-2.7/biom/_transform.o
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_transform.c:250:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it by " \
>   ^
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:27:0,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_transform.c:250:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1448:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
>  _import_array(void)
>  ^
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/biom/_transform.o -o /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_transform.so
> building 'biom._subsample' extension
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_subsample.c -o build/temp.linux-x86_64-2.7/biom/_subsample.o
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_subsample.c:250:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it by " \
>   ^
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:27:0,
>                  from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_subsample.c:250:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1448:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
>  _import_array(void)
>  ^
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/biom/_subsample.o -o /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_subsample.so
> 	pybuild --build --test-nose -i python{version} -p 3.5
> I: pybuild base:184: /usr/bin/python3 setup.py build 
> running build
> running build_py
> creating /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/err.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/exception.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/util.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/parse.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> creating /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
> copying tests/test_table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
> copying tests/test_err.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
> copying tests/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
> copying tests/test_parse.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
> copying tests/test_util.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
> creating /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/table_head.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/uc_processor.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/installation_informer.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/table_normalizer.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/table_converter.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/util.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/table_subsetter.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/metadata_adder.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/table_validator.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> copying biom/cli/table_summarizer.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
> creating /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> copying tests/test_cli/test_validate_table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> copying tests/test_cli/test_table_normalizer.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> copying tests/test_cli/test_show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> copying tests/test_cli/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> copying tests/test_cli/test_summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> copying tests/test_cli/test_uc_processor.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> copying tests/test_cli/test_table_converter.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> copying tests/test_cli/test_add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> copying tests/test_cli/test_subset_table.py -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
> running egg_info
> writing requirements to biom_format.egg-info/requires.txt
> writing dependency_links to biom_format.egg-info/dependency_links.txt
> writing biom_format.egg-info/PKG-INFO
> writing top-level names to biom_format.egg-info/top_level.txt
> writing entry points to biom_format.egg-info/entry_points.txt
> reading manifest file 'biom_format.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> no previously-included directories found matching 'docs/_build'
> warning: no previously-included files matching '*.pyc' found anywhere in distribution
> warning: no previously-included files matching '*.pyo' found anywhere in distribution
> warning: no previously-included files matching '.git' found anywhere in distribution
> writing manifest file 'biom_format.egg-info/SOURCES.txt'
> copying biom/_filter.c -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/_filter.pyx -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/_subsample.c -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/_subsample.pyx -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/_transform.c -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> copying biom/_transform.pyx -> /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
> running build_ext
> building 'biom._filter' extension
> creating build/temp.linux-x86_64-3.5
> creating build/temp.linux-x86_64-3.5/biom
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c biom/_filter.c -o build/temp.linux-x86_64-3.5/biom/_filter.o
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_filter.c:250:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it by " \
>   ^
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:27:0,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_filter.c:250:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1448:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
>  _import_array(void)
>  ^
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/biom/_filter.o -o /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/_filter.cpython-35m-x86_64-linux-gnu.so
> building 'biom._transform' extension
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c biom/_transform.c -o build/temp.linux-x86_64-3.5/biom/_transform.o
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_transform.c:250:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it by " \
>   ^
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:27:0,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_transform.c:250:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1448:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
>  _import_array(void)
>  ^
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/biom/_transform.o -o /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/_transform.cpython-35m-x86_64-linux-gnu.so
> building 'biom._subsample' extension
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c biom/_subsample.c -o build/temp.linux-x86_64-3.5/biom/_subsample.o
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_subsample.c:250:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it by " \
>   ^
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:27:0,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from biom/_subsample.c:250:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1448:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
>  _import_array(void)
>  ^
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/biom/_subsample.o -o /«BUILDDIR»/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/_subsample.cpython-35m-x86_64-linux-gnu.so
> # indep:
> PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
> /bin/sh: 1: sphinx-build: not found
> make[1]: *** [override_dh_auto_build] Error 127

The full build log is available from:
   http://people.debian.org/~lucas/logs/2016/07/14/python-biom-format_2.1.5+dfsg-2_unstable_gcc5.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.