[Debian-med-packaging] Bug#828844: ITP: r-cran-adegenet -- GNU R exploratory analysis of genetic and genomic data

Andreas Tille tille at debian.org
Tue Jun 28 12:53:50 UTC 2016


Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>

* Package name    : r-cran-adegenet
  Version         : 2.0.1
  Upstream Author : Thibaut Jombart <thibautjombart at gmail.com> et al
* URL             : https://cran.r-project.org/web/packages/adegenet/
* License         : GPL
  Programming Lang: GNU R
  Description     : GNU R exploratory analysis of genetic and genomic data
 Toolset for the exploration of genetic and genomic data. Adegenet
 provides formal (S4) classes for storing and handling various genetic
 data, including genetic markers with varying ploidy and hierarchical
 population structure ('genind' class), alleles counts by populations
 ('genpop'), and genome-wide SNP data ('genlight'). It also implements
 original multivariate methods (DAPC, sPCA), graphics, statistical tests,
 simulation tools, distance and similarity measures, and several spatial
 methods. A range of both empirical and simulated datasets is also
 provided to illustrate various methods.


Remark: This package is part of a chain of dependencies to package
r-cran-treescape.  It will be maintained by the Debian Med team at
  svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-adegenet/trunk/



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