[Debian-med-packaging] Bug#818397: salmon: FTBFS: 'MEM_F_SELF_OVLP' was not declared in this scope

Martin Michlmayr tbm at hpe.com
Wed Mar 16 20:36:46 UTC 2016


Package: salmon
Version: 0.4.2+ds1-2
Severity: serious

This package fails to build in unstable:

> sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on dl580gen9-02.hlinux
...
> /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp: In function 'void sampleRound_(std::vector<std::pair<const TranscriptGroup, TGValue> >&, std::vector<int>&, std::vector<double>&, double, std::vector<int>&, MultinomialSampler&)':
> /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp:119:18: warning: unused variable 'classCount' [-Wunused-variable]
>          uint64_t classCount = eqClass.second.count;
>                   ^
> /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp: In function 'void mem_collect_intv(const SalmonOpts&, const mem_opt_t*, const bwt_t*, int, const uint8_t*, smem_aux_t*)':
> /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp:159:36: error: 'MEM_F_SELF_OVLP' was not declared in this scope
>      int start_width = (opt->flag & MEM_F_SELF_OVLP)? 2 : 1;

-- 
Martin Michlmayr
Linux for HPE Helion, Hewlett Packard Enterprise



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