[Debian-med-packaging] Bug#823920: ITP: jmodeltest -- HPC selection of models of nucleotide substitution
Andreas Tille
tille at debian.org
Tue May 10 13:02:08 UTC 2016
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>
* Package name : jmodeltest
Version : 2.1.10
Upstream Author : Diego Darriba <diegodl84 at gmail.com>
* URL : https://github.com//ddarriba/jmodeltest2
* License : GPL
Programming Lang: Java
Description : HPC selection of models of nucleotide substitution
jModelTest is a tool to carry out statistical selection of best-fit
models of nucleotide substitution. It implements five different model
selection strategies: hierarchical and dynamical likelihood ratio tests
(hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC),
and a decision theory method (DT). It also provides estimates of model
selection uncertainty, parameter importances and model-averaged
parameter estimates, including model-averaged tree topologies.
jModelTest 2 includes High Performance Computing (HPC) capabilities and
additional features like new strategies for tree optimization, model-
averaged phylogenetic trees (both topology and branch length), heuristic
filtering and automatic logging of user activity.
This package is maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/jmodeltest.git
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