[Debian-med-packaging] Bug#823920: ITP: jmodeltest -- HPC selection of models of nucleotide substitution

Andreas Tille tille at debian.org
Tue May 10 13:02:08 UTC 2016


Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>

* Package name    : jmodeltest
  Version         : 2.1.10
  Upstream Author : Diego Darriba <diegodl84 at gmail.com>
* URL             : https://github.com//ddarriba/jmodeltest2
* License         : GPL
  Programming Lang: Java
  Description     : HPC selection of models of nucleotide substitution
 jModelTest is a tool to carry out statistical selection of best-fit
 models of nucleotide substitution. It implements five different model
 selection strategies: hierarchical and dynamical likelihood ratio tests
 (hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC),
 and a decision theory method (DT). It also provides estimates of model
 selection uncertainty, parameter importances and model-averaged
 parameter estimates, including model-averaged tree topologies.
 jModelTest 2 includes High Performance Computing (HPC) capabilities and
 additional features like new strategies for tree optimization, model-
 averaged phylogenetic trees (both topology and branch length), heuristic
 filtering and automatic logging of user activity.


This package is maintained by the Debian Med team at
    https://anonscm.debian.org/git/debian-med/jmodeltest.git



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